AMCG00003008


Basic Information

Item Value
gene id AMCG00003008
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9562280 ~ 9575635 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003008
GTCACTTCTGGGAAAGTCCATCCACAGCGCCGCATCAAAACGGCAGGACAGCCGGAGCGCAGAAGGAggatattttcacatttgaagTAATACTAAACGGGAAAACAACTTTATAAAAGTAATAAGTCTTGGTTATTTTAGTCCAGTAATGCCCGCATTTCCTTAAGAATGACCCAGATTGCAGACGTTTTTAAGGCCGAATCGGACTCTTGTGCGGAAAGGAAGTTTGTTTACATCGAGAAGCCGGGCCTAGTCCAACCTCGCAGGGAGTCCATGGCTCTGGGGGCTCCGATTTGAATTGAGGATCGGAGGTCTCATTAAATGTGGATTTCACAACTCCGGAGACGTGTTTAGCTGAGCATAAAAATGGAGAAGCCCCCTTTTAGGCAGAATCAAGTATGTGGAGCGTGGGAAATGAAGGAGAGGTTGGGAACAGGAGGATTCGGCCATGTCTATTTATACCAACATCTGgAAACCTCTGAGAAGATTGCTGTTAAATCATGTCGTCTTGAACTGAACCAGAAGAACAAAGAGAGATGGTGCcgtgaaatacaaataatgaaaaaGTTAAAGCACATCAATGTGGTCACAGCACGAGAAGTGCCTGAGGAAATGAAGAACATAGCCTTTAATGATCTTCCACTTTTAGCCATGGAATATTGCTCCAAGGGAGATCTTCGGAAAatgttGAATAGGTCTGAAAATTGCTGTGGCCTGAGAGAAAGTGAATTACTCTCCTTGCTGAATGATGTTGGGTCAGGAAtccaatatttacatgaaaataaaattattcacAGAGATCTTAAACCAGAGAACATAGTTCTTCAAGATATTGATGGAAAGTTAGTTCACAAAATAATCGACTTGGGTTATGCCAAAGACCTGGATCAGGGGAGTCTTTGCACATCGTTTGTGGGAACGTTACAGTACTTGGCACCTGAACTTTTTGAGAATAAGCCATATACAGTAACAGTAGATTACTGGAGCTTCGGCACGATGATCTTTGAATGCAGCTGTGGTTTCCGTCCTTTTTTGCACAATCTTCAGCCTGTACAATGGACCAACAAAGTACGGAATAAAGGGCCAATGGACATCATGGCTGTTGAAGAAATGAACGGTGAAGTCAAGTTCTCCACTCACCTACCCTATCCTAACAACCTCAGCAGGACAATGCTGGGGCCCCTTGAGAATGTATTACAGCTGATGCTGAGATGGGACCCTgagcagagagggggagggataAACCCTGACCGAAAACAGCCAGAATGTTTTGCTGTTCTAGATGATATTTTAAGTATGAAGGTTGTgcacatattaaacattacctCTGCAAAAATCCACTCTTTCCAACTGACACATGAAGAAGGACTTCATTCCCTCCAGCAACGCATTGAAATGGAGACCGGAATTGAACATCTAAATCAAGAGCTGCTGCTAGAAACCGGGGTCTCCCTGGACCCTCGGAAACCTGCTGCTCAGTGTGTACTGGATGGAGTTGTAAGGGCCTctatttacacttttttttttcctctcaaatTTCGAATAAGAATGTTGCTATTGATTTTACGAGAACCCAAAACCCAATTGCCCAATGCTTCACTGAGGAAAGTTTGGGGGGAGGCAGTGAGTTACATCTGTGGACTGAATGAAGATTACAGACGGCTTTTCCAAGGCCAAAGAGCAgccatGTTGAGCCTCCTTCGGTATAACACCAACCTTACAAGATACAAAAACTCAATGTTTTCCGTCTCCCAGCAGTTAAAAGCTAAGCTGGACTTCTTCAAGACCAGCATTCAGTATGACTTGGAAAAATACAGTGATCAGATGCAATATGGCATATctTCTGAGAAGATGTTGAAGGCTTGGCAGGAAAATGAGGAGAGGGCAGCAGCTTATGGACAGGTTGCAGAAGTCAACTATTTAGATGAAGAAATAATGTCTCTGCACTCTGAGATTGTTGAACTGCAGAGAAGTCCGTATGCGAAGCGCCAAAGCGATGTCATGGAGCAGCTtgaaGACAAAGCGATTGAACTCTACAGGCAGctgaaagtgaaatgtaaagCTGAGCCACAGCATGGTTACAGTGACAGCTCGGAGATGGTGAGAGTCATTTTGCAAACTGTGCAGAATCAAGACCGAGTTCTGAGGGACCTGTATGCACACTTGAGCAAGATCTTGTCAAGCAAACAGAAGATAATCGATTTGTTCCCGAAGATAGATAAAGCGATCGAGAACATCAAGGAGGCTGACAACACTGTAATGCAGATGCAGATGAAAAGGCAACGAGAATTTTGGCATCTGCTAAAGATTGCCTGTGCTCAGAATTCAACACGCCAATGTATAACTCCAAGCCTAGACGCCTCGAACTCCCCACAGGTCTCGGCATGGACACAGCAAGGGCAACCAATCAGCTCGCCACATCCCCTCACATCCTTACCTGGACCAAACGACAGTGACTCCGTTCCTCGTTTACTCGAAGAGAATCAGAAGTATCTGAGCCAGTTGACAAGTTTGATGCAGGAAACCGTTGACGATCAAGCAAAAAGTATAATGGATCAAGATTGGAAATGGACAAAATATGAATCTCTGGATAGAATAAtaccaaatatttaaatctatttaacgCAACTGATTTTTACTTTTGACTTCATCCTACTTTGACTTCATCACTTGTTAACACTAATGGTATTTATGTACCAACACTTCTTATTTGGCGGTATggctaatttatttaatgaaaatccaCAGAATACCTTTGCCATTTTTCGAAGGATATATCCATGGACAATTGAAAATGCATTCTGACAAAATGTGGTGAAGTTGCTCAGTATGTACACTGCAATTTGCTTAAGAAAGGCTAATGTCCAAGTAGCTATTTCCCATAAATGAAATCTCTTAACACCGCGTCAAACAGAACTATCTTCACTCCGGATGAAGAAAACGGATCATCTGAAATTCCAAATGTTGTGTTACAAAAGTAAGCCATTATGAAGGATAACATAAATACAAGCATATTCTACaattcatgttttacattttttttttttttcagcattttgatTTTAAGATTCAGGTCTATTTTATCTCACCTTTCCATTTTGATTTTGGAATATAATGATTACATTCTAATTATCTAGAGTCACCATCAATAGAGAAATAAAGAAGCCATTTAGATTACTTTAGAAATTGGTAATATGTTAATCCGCTTTATCTGCACTTTTCAATGCTTACTGTGAACCCCGACAGTTTAATGTATCTTTTGTTGAAATATTGTCAAAACAAAGCACAGTAGTAAATATAACTTCCTTTCAACCTGGAATCTTTCATCATTTTATTCAAAGATCAAGACTTTTATGCagttctgtttatatatttttctgtttttgtaaatgtgttcacACTTTTGGCTTTACATGACTCTCCCCTCTGGATCCAACTGTCTTTTGAGGTTGAATTACATGTTTTAGATAtgtagtttaattgtatttatttattatggtttCTGTTCCTGAGTTATACATTTGTTATCCAGTCTTTACTTTGTGTAACTTCTTGATAATTGCCTTTTGTTCCTGAATCTGTGGTTCACTTTACATCTGTAACGAATGTGAAATCTGAGATTAATACTGAAACGTTTCAAATTGTGACCTTTAGAAACTGATAGATTTTACCAGGTCcatgttgatttaaaataaattgaatggtAAAAAATGACATTAGTTTGTTAGAAAAATATTGAGATGTCAATGttgttaaaacatgcagtgaaaGTGTTAGATGAACAACCATGTACAGAGGGATTGTGAACTCTCTTCAGTTATCAGGAAAGCCATATCCAAGTATTGCCTTATTGCAAGGCCATAAAATTGAATTCAGTTTAGGTCAATCTTTGGCATATAGTGCATTTGTAATTGCCAAGTTAGAATTGGAAGGAATTAtaattgtgaatttaaaaagtttCCCGTTGCTTTCAGTGGTTTTCTATTTTTCACCCTTGTATAGCATGAAAATCAAATGTAAGAATTAcaattatatagttttaatttgattttaagatCAGTTTGTCAAATTATATTGTCAGAGCCTTAATACAGAATGGATTGCTAGTTTTCAATTTTGCTACTGTCGGGTGTCACTTACATTACGGGTCCACATCTCTGATCTGGAATAGCACTCAGTTTTTCTACGGAAGTGAATTAAGTGAAGCcccacaagaaagaaaatggcttTGTATTTCTACACAGTTCCACTGACATGTTACAGTTTGAGTATATAAGCAACCGAACAACTTCTTATCATGTATATTTGAACAAATTTCTTACTGCATATGTGATGTCAAGGATTTCCAGGAGATAGActgcatataaaaaatatatatattggaaagaaattaaataaatctattttttctgttttattttttttcaatgtgtgtAACCTGATTCTTTATGGAGCAAATGAGTGTAGATTAATTAGACAGTTCCAGAGTTCATGTGGTACATTGAATTGTATATGGGATGTATGTTTTATGGCAGTACTGTACAGATCTAGGTGTTTTCAGTTCTGTGAGATATGTAAATTGTGACtgaatgcatattaaaaaaaatacattaatatggaaagttctttctttattttttcataccaAAAAGACAGCCACTTTCAGGCATAGATCACATTAAACTTATCttgattgtatgtatatatgaagaAATTCAAGCAATGTAATCCACGTTTTGAGCTTACTGTAATTAttccaaataaatcaattacacCAG

Function

GO:

id name namespace
GO:0007252 I-kappaB phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0008384 IkappaB kinase activity molecular_function

KEGG:

id description
K04467 IKBKA, IKKA, CHUK; inhibitor of nuclear factor kappa-B kinase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003008 True 4778 mRNA 0.38 21 9562280 9575635

Neighbor

gene id symbol gene type direction distance location
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding upstream 53983 9494051 ~ 9508297 (+)
AMCG00002997 NA coding upstream 237139 9316731 ~ 9325141 (+)
AMCG00002995 NA coding upstream 289122 9268917 ~ 9273158 (+)
AMCG00002994 znf503,LOC107708443,LOC103355656,LOC102798683 coding upstream 406145 9153964 ~ 9156135 (+)
AMCG00002992 LOC108263740,LOC103386992,LOC106613356 coding upstream 744316 8794807 ~ 8817964 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding downstream 3964 9579599 ~ 9583885 (+)
AMCG00003007 NA coding downstream 54177 9629812 ~ 9633358 (+)
AMCG00003018 NA coding downstream 166803 9742438 ~ 9742839 (+)
AMCG00003020 NA coding downstream 325632 9901267 ~ 9920544 (+)
AMCG00003023 LOC107552681 coding downstream 348046 9923681 ~ 9926024 (+)
G140002 NA non-coding upstream 415708 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 601855 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 629311 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 641550 8920468 ~ 8920730 (+)
G139995 NA non-coding upstream 710594 8850179 ~ 8851686 (+)
G140156 NA non-coding downstream 155013 9730648 ~ 9730863 (+)
G140188 NA non-coding downstream 191451 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 206299 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 212112 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 363221 9938856 ~ 9960116 (+)
G140030 NA other upstream 231816 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 245647 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 318181 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 1065315 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1517867 8037577 ~ 8044413 (+)
G140189 NA other downstream 202615 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 269141 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 1105136 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 1179266 10754901 ~ 10756840 (+)
G140613 NA other downstream 1633938 11209573 ~ 11212111 (+)

Expression


Co-expression Network