AMCG00003011


Basic Information

Item Value
gene id AMCG00003011
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9751185 ~ 9758202 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003011
AGCAGCGCCGGGGTCATGTGATCCCATTGAGCAGCTCGCCGCCCGGGTCCCGTTTCATTGAATAGAAACCGTCATATTCATATTCCTGTCAGCCGTGGTATTTTCAGGTGTCGTTGCAGACTTCCTGATTACGGACACTAGACAGTAGATGGTGACGGCGGTAACCCGAGTGGGAGCATCATGGCTTTTCTCCGCGGCGTCGATTCCCATGTAGTGATCGTGGGCTGCGGTATATCGGGCATAGCAGCCGCTCAGAAGCTCACCCAACACGGGTTTAAACATGTGCACATCATCGAGGCGACTGGGAGAAGCGGGGGCAGGATTAAAACGGCCACTTTCGGAAATGCAATTGTGGAGATTGGGGCAAACTGGATCCATGGCCCATCCCAGGAAAACCCTGTGTTCCGCCTGGCTTGTAAGTACGGGCTGCTGGAAAAACAAGCCATGTCTGAGGAAAACCAGCAGCTAGATGTCGGGGGTCACCCGCCATTCAAGCCCAATTGGTTCTCCAGTTCTGGGAATAAACTGGGGCCAGAATTAACAGAGCCGGTCACTGAACTTTTTATGAACTGCCTTATGAAGAGTCAGGAGTTCCAAGAAGCCGAGAGGGAGCCTCTGCCCAGTGTGGGAGAGTTCATAAAGAGGGAAATCGCACAAGATATGGCCGGATGGAAGGATGATGCCCGAAccagaaaactgaaactggcAATGATGAGCATGCTGCTAAAGTTGGAGTGCAGCGTTAGTGGGACTCACACCATGGACCGTGTGGGACTGGGAGCTTATGGTCTCTACAGAACACTCCCTGGCCTAGACTGCACTTTTCCTGGAGGTTATGAAGGCTTAACAGATGCCATGATGAAGGAACTGCCAAAGGGTATAGTGTCCTACAACAAGCCAGTCAAATGCATTCACTGGTGTGACTCCTACAGTCAAGCAGCCTCCTCAGAGAAGACATTCCCTGTCGTAGTAGAATGTGAAAATGGAGAAACCTTCCCAGCTGACCATGTTATTTTCACTGTTCCTTTAGggTACTTTAAAAAGCACTATGACACACTTCTTAGTCCACCATTGCCCCTGAGTAAAGTGCACTCCATTCAGAGGATGGGCTTTGGGACAAATAACAAGATCTTCCTGGAGTTTGAGCAGCCGTTCTGGGAGCCAGACTGTGAGGTGATCTACTTTGTGTGGGAAGATGAGTCCTCTGTTGTCGATGTGGTCCCAGATGTGCAACGGTTCTGGATGAAGAAACTGTTTGGCTTCACTGTCCTGAAACCAACTGAAAGGTATGGCCATGTGCTGTGTGGCTGGATCGCAGGGCATGAATCTGAATACATGGAATTTCTCTCTGAAGCCGAAGTTAAGGACTCTATTACACAAGTAATTCGCAGGTTTACAGgAAATGCAACAATCACCCCCAAGAGGATCATGCGGTCTGCATGGTACCATGACCCCTACACTTGTGGATCTTACACTTACGTTGCAGTGGGATGTTCGGGATTTGACATTGATATCATCGCGGAGCCCCTTCCACTGAAGGAATCGCACTCAAAgCCTTTACAGGTTCTGTTTGCTGGAGAAGCGACACACAGATCGTTCTTCTCAACGACCCACGGGGCCCTGCTGTCGGGGTGGAGGGAGGCAGACAGACTCATCGCCCACTACGCCCCGTCTTCGTTTTCTGAGAAACACAGTTCAAAGCTGTAATGACAGGTTCTGTTTCCTAATAAATCAGTTCATAAGAGGATTCGGTAACTCCTGAGAGTTATACAAGGTTTATGAATACATGGATGCATTACGTTGCCTTAAATTCACAATTATAAGAAGGTGTGTTTGGTCCAGTGGTGCAGAACAGAAGTGATCATTAACGCAAAATCCTGAAACTCGTTTAACCCTGATCCATAGGGGacttataaaatgtaaacattattttgtctatttgtctgtattctactttacaattattatttttaaggaattTCACTTCAGACTGTGCTTTTCATATCAGCTGATGAAATCCCCATAATTGCATTGTATTCTGTTCTATGAATTTAGCAAGttattcataaataattaaaatctaaaaaatctaaatagaaatagaaatatggagtgtgatttgaattattttcatgaTGATTCTGTTCATAGGACCACTTTtacctaaaatgaaaatagataTATTACTCTTCATGGTTTCAGTTTGTTcaaataaaagtttatatttcaaattgaattgtCTGCATCCatttatgcatgtatacatCTATATGTAAGGATACAACTTGAAAATTCTAaagagtattttgtttttgtggagcCTGTTTTCCCCACAACTATAATTTTGCAATTCTATTTCACTAAATGTATTGATCATACACATCCAAAAAATGTCCTGCTAGACAAAGAAAGAAGTAGGGGACAAAAAGTGTCCTAGGGTACAATGGTGTGGCAGCCTTATCGTTGACTCCTA

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00308 PAOX; N1-acetylpolyamine oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003011 True 2473 mRNA 0.45 7 9751185 9758202

Neighbor

gene id symbol gene type direction distance location
AMCG00003015 NA coding downstream 672 9746329 ~ 9750513 (-)
AMCG00003013 echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378 coding downstream 11935 9736172 ~ 9739250 (-)
AMCG00003014 NA coding downstream 22545 9701635 ~ 9728640 (-)
AMCG00003016 NA coding downstream 112969 9637791 ~ 9638216 (-)
AMCG00003010 gcp2,tubgcp2,LOC106589265 coding downstream 121499 9621880 ~ 9629686 (-)
AMCG00003021 NA coding upstream 4694 9762896 ~ 9773347 (-)
AMCG00003022 NA coding upstream 33645 9791847 ~ 9792269 (-)
AMCG00003029 NA coding upstream 177209 9935411 ~ 9941910 (-)
AMCG00003028 NA coding upstream 183854 9942056 ~ 9945940 (-)
AMCG00003027 NA coding upstream 223008 9981210 ~ 10032434 (-)
G140174 NA non-coding downstream 10245 9740654 ~ 9740940 (-)
G140093 NA non-coding downstream 210632 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 508198 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 514883 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 594623 9150816 ~ 9156562 (-)
G140199 NA non-coding upstream 7451 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 90693 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 130956 9889158 ~ 9889626 (-)
G140279 NA non-coding upstream 277976 10036178 ~ 10037857 (-)
G140368 NA non-coding upstream 463578 10221780 ~ 10339260 (-)
AMCG00003017 NA other downstream 143869 9596943 ~ 9607316 (-)
G140015 NA other downstream 513455 9236658 ~ 9237730 (-)
G140006 NA other downstream 903345 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1256589 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1812944 7931166 ~ 7938241 (-)
AMCG00003049 NA other upstream 543598 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1850261 11608463 ~ 11622649 (-)
G140758 NA other upstream 1882614 11640816 ~ 11647619 (-)
G140757 NA other upstream 1935804 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2970036 12728238 ~ 12739807 (-)

Expression


Co-expression Network