AMCG00003013 (echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378)


Basic Information

Item Value
gene id AMCG00003013
gene name echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9736172 ~ 9739250 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003013
ATGGCAGCGTTTTGCAGAACTGCAGCCTTTCTGCTAAGACCAGCGAAAGCCTTGCCTTACACATTGACCGCTGCTCGAAGTTGCAGCTCGGgtgGCCAGTACCAGTATATCTTAGTGGAAAAGAAGGGTGCAAATCAGAATGTAGGTTTCATCCAGTTAAATCGCCCCAAAGCCTTGAATGCCCTCTGTGATGGTCTGATGACTGAGATGGGTCAGGCTTTAGATGCTTTTGAATCCGATAGCCAAGTTGGTGCCATAGTGATCACAGGCAGTGAGAAAGCATTCGCAGCTGGAGCAGACATTAAAGAGATGCAAAACCGAACCTTTCAAGAGTGCTACGGTGGCAACTTCCTTGCCCACTGGAACAGGGTTTCAACGGTTAAGAAGCCAGTCATAGCAGCTGTGAATGGATTTGCACTTGGTGGAGGATGTGAGCTGGCAATGATGTGTGACATTATCTACGCTGGGGAGAAGGCACAGTTTGGGCAGCCAGAAATCCTTCTGGGCACAATACCTGGTGCTGGAGGAACTCAGAGACTAACGAGAGCTGTAGGGAAGTCGTTGGCAATGGAAATGGTTCTCACGGGTGACAGAATTTCGGCTCAGGAAGCAAAAGCATCAGgcCTTGTAAGTAAAGTATATCCCACTGCTCAGCTAGTAGAGGAAGCAATCAAATGTGGAGAGAAAATTGCTGGGAACTCGAAGCTCGTCTCCTCAATGGCCAAAGAGGCTGTCAATGCAGcCTATGAACTGTCATTAGCCGAAGGAAATCGATTGGAGAAGAGATTATTCCATTCAACCTTTGCCACAGCTGATCGTAAGGAAGGAATGACAGCATTTGTTGAAAAGAGAAAAGCCATCTTTGAGGACAAATAA

Function

symbol description
echs1 Predicted to enable enoyl-CoA hydratase activity. Predicted to be involved in fatty acid beta-oxidation. Predicted to be active in mitochondrion. Is expressed in EVL; gut; intestinal bulb; liver; and yolk syncytial layer. Orthologous to human ECHS1 (enoyl-CoA hydratase, short chain 1).

NR:

description
PREDICTED: enoyl-CoA hydratase, mitochondrial-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K07511 ECHS1; enoyl-CoA hydratase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003013 True 876 mRNA 0.47 8 9736172 9739250

Neighbor

gene id symbol gene type direction distance location
AMCG00003014 NA coding downstream 7532 9701635 ~ 9728640 (-)
AMCG00003016 NA coding downstream 97956 9637791 ~ 9638216 (-)
AMCG00003010 gcp2,tubgcp2,LOC106589265 coding downstream 106486 9621880 ~ 9629686 (-)
AMCG00003012 NA coding downstream 115132 9607782 ~ 9621040 (-)
AMCG00003005 NA coding downstream 181505 9545998 ~ 9554667 (-)
AMCG00003015 NA coding upstream 7079 9746329 ~ 9750513 (-)
AMCG00003011 NA coding upstream 11935 9751185 ~ 9758202 (-)
AMCG00003021 NA coding upstream 23646 9762896 ~ 9773347 (-)
AMCG00003022 NA coding upstream 52597 9791847 ~ 9792269 (-)
AMCG00003029 NA coding upstream 196161 9935411 ~ 9941910 (-)
G140093 NA non-coding downstream 195619 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 493185 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 499870 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 579610 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 803203 8932770 ~ 8932969 (-)
G140174 NA non-coding upstream 1404 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 26403 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 109645 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 149908 9889158 ~ 9889626 (-)
G140279 NA non-coding upstream 296928 10036178 ~ 10037857 (-)
AMCG00003017 NA other downstream 128856 9596943 ~ 9607316 (-)
G140015 NA other downstream 498442 9236658 ~ 9237730 (-)
G140006 NA other downstream 888332 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1241576 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1797931 7931166 ~ 7938241 (-)
AMCG00003049 NA other upstream 562550 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1869213 11608463 ~ 11622649 (-)
G140758 NA other upstream 1901566 11640816 ~ 11647619 (-)
G140757 NA other upstream 1954756 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2988988 12728238 ~ 12739807 (-)

Expression


Co-expression Network