AMCG00003016


Basic Information

Item Value
gene id AMCG00003016
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9637791 ~ 9638216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003016
ATGGCCCCTTACTCTCGCATCATGAATCCTGTCCAGGGGTCTCTCTCCCAAGAGATGAAGCCGCAAGCAAGAGACGAGCCGGAGAAGGAAGATCTCCCGTCAAAAGATCAGACACAGGCCACCAAAGGATGTAAAAGCAAGATCTCCAGCCTCCCTTTTAGCGTCGAATCGCTGATCTCGGACCGGGCGACTTGCAGGACTCAGTTTTCCTCCACCGACCCGAGTTTGGTGCCTCCTAAAGCGGTGGCAGAGGCGCCCAAAGCCAGCTCTCCAAGGACTCATTACGCAGAGAAGAGTATCTCCGGGGAGAGCTTGCCAAACTTGAGAGACTGTCCGAAAACCGAAAGCGAAGACGTGAATGACAACGAGCAGAGCACTTGGTTTCAATCTTCAGCTTACTCAACTCCTCCAAGTAAGTGGCTTTGA

Function

GO:

id name namespace
GO:0043049 otic placode formation biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003016 True 426 mRNA 0.53 1 9637791 9638216

Neighbor

gene id symbol gene type direction distance location
AMCG00003010 gcp2,tubgcp2,LOC106589265 coding downstream 8105 9621880 ~ 9629686 (-)
AMCG00003012 NA coding downstream 16751 9607782 ~ 9621040 (-)
AMCG00003005 NA coding downstream 83124 9545998 ~ 9554667 (-)
AMCG00003004 vcl,LOC108426801 coding downstream 112898 9501245 ~ 9524893 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding downstream 197051 9434060 ~ 9440740 (-)
AMCG00003014 NA coding upstream 63419 9701635 ~ 9728640 (-)
AMCG00003013 echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378 coding upstream 97956 9736172 ~ 9739250 (-)
AMCG00003015 NA coding upstream 108113 9746329 ~ 9750513 (-)
AMCG00003011 NA coding upstream 112969 9751185 ~ 9758202 (-)
AMCG00003021 NA coding upstream 124680 9762896 ~ 9773347 (-)
G140093 NA non-coding downstream 97238 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 394804 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 401489 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 481229 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 704822 8932770 ~ 8932969 (-)
G140174 NA non-coding upstream 102438 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 127437 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 210679 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 250942 9889158 ~ 9889626 (-)
G140279 NA non-coding upstream 397962 10036178 ~ 10037857 (-)
AMCG00003017 NA other downstream 30475 9596943 ~ 9607316 (-)
G140015 NA other downstream 400061 9236658 ~ 9237730 (-)
G140006 NA other downstream 789951 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1143195 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1699550 7931166 ~ 7938241 (-)
AMCG00003049 NA other upstream 663584 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1970247 11608463 ~ 11622649 (-)
G140758 NA other upstream 2002600 11640816 ~ 11647619 (-)
G140757 NA other upstream 2055790 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 3090022 12728238 ~ 12739807 (-)

Expression


Co-expression Network