AMCG00003017


Basic Information

Item Value
gene id AMCG00003017
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9596943 ~ 9607316 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003017
ATGAACACTGAACTAAACGAGGAGACGCTGCAGGATCTGTATGCTTGGATTGATACAGTTCCACTTTCCAGACCGAAGAGGAATATAGCAAGAGACTTCAGTGACGGAGTGATGGCTGCAGAGGTTGTGAAGTGTTTCTTTCCCAGACTGGTGGAGCTACATAACTACATTCCTGCAAACTCTACCCAACAGAAACTCAGCAACTGGGGAACCCTGAACAGGcaaGATTTGGAATATTACAGCGCCAGAAATGAAAGATccaaaaaagAATACACACAGATGCCAACAATTCAATCTTACAGGACTCAAGATCAGAAAAGGGGGGAATGGACATATAATCAGACCGACAGCAGTAATCCAAGCTCTGTGGACCCTGCGGTCCACCTCCTCATGGATGAGAAAGAGCAGGCCCTACTCGCCCTGCAGGAGACCGTGGAG
>TU176247
GGTATCTTAGCAACCACCTGCAACAATCTTGTCGAGACCTcgaatttgaaaatataaaaactggtTACTTATTACAAAGCCCTCGTATCATTTTGGACACAATGAACACTGAACTAAACGAGGAGACGCTGCAGGATCTGTATGCTTGGATTGATACAGTTCCACTTTCCAGACCGAAGAGGAATATAGCAAGAGACTTCAGTGACGGAGACTGGTGGAGCTACATAACTACATTCCTGCAAACTCTACCCAACAGAAACTCAGCAACTGGGGAACCCTGAACAGAATACACACAGATGCCAACAATTCAATCTTACAGGACTCAAGATCAGAAAAGGGGGGAATGGACATATAATCAGACCGACAGCAGTAATCCAAGCTCTGTGGACCCTGCGGTCCACCTCCTCATGGATGAGAAAGAGCAGGCCCTACTCGCCCTGCAGGAGACCGTGGAGATattgcaaatgaaagtgaacaGACTTGAGCACCTTGTGCAGCTGAAAGACTTGCGAATTGAAGATTTAACAAGACACTTGGAAAGATATAAGGCAAGAGCTAATATGAAATGAATACCCTTCTATTCCAGACTAGTTGGAACTACAGaaaacagcagtgtgtgtatatatatatctcatcaCCTGCCCATATCcgtccactgctggatgaaggccttcccGAAAGGATCTACagtttcccttttccatgtcacgcctgcaaagtttattatttcatcttcccatctttcatCTGATCAtcttcttggtcttttttcatGTCTTGGGATCCAATCGATAGCCTCCTTTGTTCATCTTTCACCTGTTCTCCTTTCAaggtgtctggcccattgccatgttagcattttcagtctttcagtgatgtcacatattttggtttgtttattttccaatctcttcttgttattccaagcagatatcttcccatgcttctttgtgttgccTGCAGTTTCTATATCAAGTGAGCAGGTTTCACTGCcgtaagtgagcactggtagtatgcttTGATCAAATCATTTTCTCTTCAGCAAATGGGTACATTTCCTTTCGACAGTGTGTGGTTTCCAttccattttcactcttcttatgatttcttccataatatttCTGTCTGCACTGATTTCTTGTCCAGGGTAGACATAACTTGTGGCTTGTATGAGTATCTGTTGCTACTTCAATGTTCTCAAATGTAATACAGCTGTTAATGTTATAAGATTACATAACCACTGAAGATTCCTATAGGATGTCAAAGAAGCAAGAAGCTTCCTTTATAAAATCAGGGATCACATATACctctgtatatttagatttatagCTGGAAATTTGTTCTCAGGGGAGGTATTTTCACTGCGTTGATGCTACTATGGTATTATAATTGtgtaaatctttatttttctgaatcATAGTATGTCTTACAATTATGTGTTATAGTTATAATTCCTTTCTGTCCCATTTCTGTGCGTTAGCAATACATTTCATCATATCCATCAAGCATCTAACATTGATGGggtttatatatatctattcaaaattaaattaaaaaatcaatcatTAAGAATTGTTAtcattacataatatatattctgtgaAGTCAAACTGACAATGAACGGATATATTAACCCAATATTAGCACTGTATTAGTCCTATGGTTGTCTAATACATTGTCTGAATATTTTATCAATAGCAATTTTTGTGTGAACTGATTAAGAAACAGGGTTGCCAACCGTCCGTAAATGTACGGACAGTTAGTAAAAAAAGATCTTAATTTCATCTTGTCCGTAAATCCGTAAAAAAGTCTGACTGTCCGTAAAAATGTCCCATTACTACTACTTCCTTCATTGCTACATTTCTGACTGCCATCAAACTTCCCTCGCAGTTAGGAACATTATTTCAACAAAAGTTTAGTGAAGAGCATAGATAGGTCAATGTTCCTGACAATCAAACGTGTTAACCAATCTGAGGACGAAGTAGGCGGATCCGCCCAAAATGGGGGAATCAATTGCAAAGTATTAATTGGAGAAAAGATTTGTTTACATCGCgcacttcctggttttagaaattcaatggGCATTGCAGCACATGGGGCTGGAATTGTCCATTGGAGAGGATGTTACTGTGTGTCATGAGCCTTGGAGATCTGCTTTTACTAGCCAATCCACAAAACCCTGTCTCAGGCAGCAGGAATAGATCAGCTGATAAGAGTTACAGACACTGAGCCagccagagccagagagagagagagagagagaggcttttaTAATTCAGCTATAATAGATGCTATTGCTATGTATGTGGTATCTTTGGATTCAGAACAGCTATGCATGTACttataatgcagtatatattatattatcatattatatattataagtggaaaatgtgcaataaagtaaaaaaataaacagaattagaTTTAGGTTTTTTCCtagcaatggaaaacagaatcTGATTCAGATTGGGCACCCATTCTGCCCAGATTTACCCCTGCCAGTGCCCCTGGGGTGCAACTGGACCAAACAAAGACTCACAGTGCACTTGATCACAGGCAAACAATCACACACCTTTACCAATTGCCCCTCTGGACACAGCAAACCCCCAATATTTGGATAAAGATAACTGTAGAAATGCATAGTGTGTGTGGTGCAGAAAGTCATTTTCTATTGCTTCTGGTGGTGTTAGGGATGTGCGGAGCCATGCTAGCAGCATGAAGCATTATGCATTTTCTAAAGCTAGTCAGGAATAGCTCATTTCCTCTTACAAAGGTCAACAGGGCAGCTCTGCACCATAGGGTGTTTatactcattttattttgacacttTTTTAAGACCAAAATAGAGGTGTCAGTAACAAATATGGCATTTTGGTAAAAATAGTCCAACTAAGTCAGTCATGTCAgtaaaacctcaaatgtatggTTGGCAACCCTGGAAACAaccagtgttttgtttgtataaagcaaatacattgtTAAATCAAAGCCAGCCCATGTCTAGAGACTGATTAATGGCATTCTTTCACAACTGACACACAAATCAGTACAGATTTGACAGGCTGGtcgttttttcttgttttatggtTCAGTGTACAGTCTGGGAATAAATGCAGTCCCACAATGAATTCTGTATTCTGTGGTTTATTTCAGCAGCACGTGTTTAGCGAGATATGTAGAAACTTGCTTAGAAGTTGCTTTATTGTTAATCTTTCTCAAATTCCGGTGTTATTAGTGTGGACACTGATAAGCTGCTGTAGATGTTATAACAAGCAATGTTAAGAGACACTCCTTATGcctgacagtgttttttttgtgggcTAGATGAGGACAAAG
>TU176248
GGTATCTTAGCAACCACCTGCAACAATCTTGTCGAGACCTcgaatttgaaaatataaaaactggtTACTTATTACAAAGCCCTCGTATCATTTTGGACACAATGAACACTGAACTAAACGAGGAGACGCTGCAGGATCTGTATGCTTGGATTGATACAGTTCCACTTTCCAGACCGAAGAGGAATATAGCAAGAGACTTCAGTGACGGAGACTGGTGGAGCTACATAACTACATTCCTGCAAACTCTACCCAACAGAAACTCAGCAACTGGGGAACCCTGAACAGAATACACACAGATGCCAACAATTCAATCTTACAGGACTCAAGATCAGAAAAGGGGGGAATGGACATATAATCAGACCGACAGGTACCTGACCTGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003017 False 438 mRNA 0.47 5 9600773 9607215
TU176247 True 3339 lncRNA 0.39 5 9596943 9607316
TU176248 False 381 lncRNA 0.44 3 9601208 9607316

Neighbor

gene id symbol gene type direction distance location
AMCG00003005 NA coding downstream 42276 9545998 ~ 9554667 (-)
AMCG00003004 vcl,LOC108426801 coding downstream 72050 9501245 ~ 9524893 (-)
AMCG00003003 LOC103355368,LOC107084594,LOC107666490,LOC107601874 coding downstream 156203 9434060 ~ 9440740 (-)
AMCG00003006 adka coding downstream 212941 9371373 ~ 9384002 (-)
AMCG00003000 kat6b,LOC102792766 coding downstream 250045 9325459 ~ 9346898 (-)
AMCG00003012 NA coding upstream 466 9607782 ~ 9621040 (-)
AMCG00003010 gcp2,tubgcp2,LOC106589265 coding upstream 14564 9621880 ~ 9629686 (-)
AMCG00003016 NA coding upstream 30475 9637791 ~ 9638216 (-)
AMCG00003014 NA coding upstream 94319 9701635 ~ 9728640 (-)
AMCG00003013 echs1,LOC107601864,LOC107676592,LOC107743519,LOC107666378 coding upstream 128856 9736172 ~ 9739250 (-)
G140093 NA non-coding downstream 56390 9540344 ~ 9540553 (-)
G140016 NA non-coding downstream 353956 9237868 ~ 9242987 (-)
G140014 NA non-coding downstream 360641 9236022 ~ 9236302 (-)
G140009 znf503,LOC107708443,LOC101070189 non-coding downstream 440381 9150816 ~ 9156562 (-)
G140007 NA non-coding downstream 663974 8932770 ~ 8932969 (-)
G140174 NA non-coding upstream 133338 9740654 ~ 9740940 (-)
G140199 NA non-coding upstream 158337 9765653 ~ 9771507 (-)
G140217 NA non-coding upstream 241579 9848895 ~ 9853413 (-)
G140228 NA non-coding upstream 281842 9889158 ~ 9889626 (-)
G140279 NA non-coding upstream 428862 10036178 ~ 10037857 (-)
G140015 NA other downstream 359213 9236658 ~ 9237730 (-)
G140006 NA other downstream 749103 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1102347 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 1658702 7931166 ~ 7938241 (-)
AMCG00002945 NA other downstream 2244122 7348811 ~ 7352821 (-)
AMCG00003049 NA other upstream 694484 10301800 ~ 10331372 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 2001147 11608463 ~ 11622649 (-)
G140758 NA other upstream 2033500 11640816 ~ 11647619 (-)
G140757 NA other upstream 2086690 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 3120922 12728238 ~ 12739807 (-)

Expression


Co-expression Network