AMCG00003018


Basic Information

Item Value
gene id AMCG00003018
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9742438 ~ 9742839 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003018
ATGGCCACCTGCTGGATGGTTATCCTGCTCTCCGCCTTCTTCTGTGAGACGGTCATCTCAAAGGGGGGCAGGGGAGGTGCGAGAGGCGCAGCCCGGGGTTCCGCCCGTGGAGCCCGGGCTCGGTTTAAGACCACCCGGTACGGTTCGTCATCACTGAGGGTGGCCGGAGCCGCGGCAGCAGGAGCAGCCGCCGGGGTCGCCGCGGGAGGGTGGTACGCGTCCTCTCGCTATCGGTCGGACGACAGCTCCGAGAGGGATACAAGTGACAATCAATACGGCAACAGGACGGGAGATGACTACTACAGCGCCAGAAGATCGGCCTCCACGCAGCACTGCGCATCCGTGCCCACTATCGCGACTGCGCTCTCTTTGATAAGCATCTCCATGGTCAAGAGCTTCTGA

Function

GO: NA

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04727 GABAergic synapse
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003018 True 402 mRNA 0.63 1 9742438 9742839

Neighbor

gene id symbol gene type direction distance location
AMCG00003007 NA coding upstream 109080 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 158553 9579599 ~ 9583885 (+)
AMCG00003008 NA coding upstream 166803 9562280 ~ 9575635 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding upstream 234141 9494051 ~ 9508297 (+)
AMCG00002997 NA coding upstream 417297 9316731 ~ 9325141 (+)
AMCG00003020 NA coding downstream 158428 9901267 ~ 9920544 (+)
AMCG00003023 LOC107552681 coding downstream 180842 9923681 ~ 9926024 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding downstream 186600 9929439 ~ 9937381 (+)
AMCG00003026 NA coding downstream 223117 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 253727 9996566 ~ 9997258 (+)
G140156 NA non-coding upstream 11575 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 595866 9146301 ~ 9146572 (+)
G139999 c3h10orf11,c13h10orf11,LOC107690203,LOC107747465,LOC107582503,LOC107678567 non-coding upstream 782013 8958739 ~ 8960425 (+)
G139998 NA non-coding upstream 809469 8932750 ~ 8932969 (+)
G139997 NA non-coding upstream 821708 8920468 ~ 8920730 (+)
G140188 NA non-coding downstream 24247 9767086 ~ 9773065 (+)
G140190 NA non-coding downstream 39095 9781934 ~ 9785792 (+)
G140192 NA non-coding downstream 44908 9787747 ~ 9788069 (+)
G140223 NA non-coding downstream 196017 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 236393 9979232 ~ 9979445 (+)
G140030 NA other upstream 411974 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 425805 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 498339 9236740 ~ 9244099 (+)
AMCG00002982 NA other upstream 1245473 8493005 ~ 8496965 (+)
AMCG00002965 eif4ebp2,LOC107564345,LOC107668794,LOC107716353 other upstream 1698025 8037577 ~ 8044413 (+)
G140189 NA other downstream 35411 9778250 ~ 9780452 (+)
AMCG00003019 NA other downstream 101937 9844776 ~ 9853453 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 937932 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 1012062 10754901 ~ 10756840 (+)
G140613 NA other downstream 1466734 11209573 ~ 11212111 (+)

Expression


Co-expression Network