AMCG00003020


Basic Information

Item Value
gene id AMCG00003020
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9901267 ~ 9920544 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003020
TAATCTAGAGATGCCAGTAGATGGTACAGAGGACCAAGACCTACCCACACAGACCAGTCCGTTTAGTGCTCTCTGTCCAAGGGAGACGGGGGTTCGACAGCAAAATGGGACCAAGAACGGAAATGCAGGCTGTCCATTCCCAGGCACGAGCCAGGCAGCCCCCCACACCGAAGCTGCCCCGGAGGTGTCCAAGAAGACCCAGTCCGTCCTTCACATCGACATGCAGCAGATCCGGGCCGTGGCCCAGAGCGCCCAGGCCGCCGAGCTGCAGGGCCTGGGGGTGGACGTCTATGACCAGGAGGTGCTGgagcagggggtcctccagcagGTGGACAGAGCCATTAATGAAGCTAACCAGGCGGCCAAAAAAGCAGAGGCAGAGAAGGAGTACCAGTCAGTGCTGGATGACTTGAGGTCTTGCACCGCTGCTGTAAAACATATCAATAAAATCATAGAGCAGCTTTCCCCTCATGCTGCCACCAGCAGAGACATCAGTAGGAAAATTGAATCTGTGCAGCggcagaaagaaaacaagGAGAAGCAGCTTAAAAAGATCAAAGCAAAGCAGAAGCGTCTTCAGGCTATCTTGGGTGGAGAAGATGTCCAGAAGATCGAGGCTGAATGGGACCAGGAGGATGAAGAGCCAGGCCCGTCAACTCTGGGCAGCATGCTCATGCCAGCTCAGGAAACAGAATGGGAGGAACTCATTCGTACCGGTCAGATGACCCCCTTTGGCACGAAAATCCCCCAAAAAACGGAGAAGAAGGAGCCCAGAAAAATCATGCTGAATGATGTATCTGGATTCGAGAAATACCTGGCTGACCAGGCCGATATGGCGGTGAACAGAAAAAAGCCCTCGGTCAGGAAgaagtttcaaaataaaataaaaggagcAATAGCACAAGGTGACGCGAGTGTAAAGGGAAAAGCAACGGTGTCCCGTAAAGATAAAAAACTCAAGAAGAACATGCTGAAGTTACAGAAGAACGCATTGAAGGTTCACTCCAAACCCAGGACTAAGGGAGAGAAGGAATTTCCCGCAGTGAAAAGGAAGGCGCAGGGAGACCTCGGCTCGGAGAGCGAGGAGTCGGAGTATGTGCCCAGCGATGAGCTCTTAGACCCGGACGCGCCAGAGCAGGACGATGACTTCTGGCTCGACGATGATGAATACGAGCTGAAGTCGTATAAGAAGAAGAGGCCGCATGCcatcaagaaaaagaaagaggtgGATGACGGTGAAGAGTATTTTCCAGACAGTTCAGAAGATGAGGAGTCGACAAAAAAGATGAATCCGAAAAAAAACAAGGATGATGGGAATGTCGAGTTTTATAGGCAAAGATTGAGGAGGTGGAAGagacagagactgagagagagagaggagcagcgAGAGGCTGGAGAAGATGACTTTTATGAGAGTGATGCTGAATTTGATGAAGGTTTCAAAGTGCCTGGATTTCTGTGGAAAAAACTTTACAAGTACCAACAGACAGGTGTCAGGTGGCTGTGGGAATTGCACTGCCAGCAGGCAGGGGGAATTCTGGGAGATGAGATGGGCCTGGGCAAGACCATCCAGATAATTGCCTTCTTGGCAGGCCTCAGCTACAGCAAGATCAGAACTCTGATGCACCAGTGGGTTAAAGAGTTCCACACATGGTGGCCTCCGTTCAGAGTGGCGGTGCTGCATGATACCGGCTCTTTCACCAGCAGAAAGGACAAGCTCATCCCTGAGATTGTAGCCTGCCATGGGATCATCATCACGTCCTACTCGTATGTCCGCATTATGCAGGACTACATTCAGAAGTACGACTGGCACTATGTGATTCTAGACGAGGGGCACAAGATCCGTAATCCACATGCTGGCGTCACCGTGGCATGCAAGCAGTTCCGCACGCCGCATCGTTTTATTCTGTCGGGATCACCGATGCAGAATAATTTGAAAGAGCTCTGGTCACTCTTTGACTTTGTCTTCCCTGGCAAACTGGGAACCCTGCCTGTCTTTATGGAGCAGTTTTCTGTCCCTATCACTATGGGGGGTTACTCCAATGCTTCTCCTGTGCAGGTACAGACTGCATACAAATGTGCTTGTGTTTTGCGAGACTCCATAAACCCATATCTTCTTCGGAGGATGAAGGCAGATGTTAAAACCAGCCTTAGTTTGCCAGACAAAAATGAGCAGGTGCTTTTCTGTAGGTTATCTGAGGATCAGAGGCAAATCTATCAAAGCTTCATCGATTCAAAGGAAGTTTATCAGATCCTAAACGGTGATATGCAGGTTTTCTCTGGCCTGATTGCTCTAAGGAAAATCTGTAATCACCCTGACCTCTTCTCTGGTGGGCCTAAAATCTTGAAAGGGATTCCCGACGATCAGTTAACCGAGGAAGAGCATTTCGGGTACTGGAAGCGATCTGGTAAACTGATCGTGGTGGAGTCTTTGCTGCGACTGTGGTACAAGCAGGGTCACCGAGTACTGCTCTTCAGTCAGTCGAGACAGATGCTGGACATCCTAGAGGTGTTTGTGAAGGAAAGGGGATACTCCTACCTTAAGATGGATGGCACCACCACCATAGCTTCCAGACAACCTCTGATTGCACAGTACAACGAGACCAAGTCGatcttcatcttcctcctcaCCACCAGAGTTGGCGGTCTAGGTGTGAACTTGACTGGCGCTAACAGGGTGATCATCTATGATCCTGACTGGAACcccagtacagacacacagGCCCGCGAGCGCGCTTGGAGGATAGGCCAGAAGCAGCAGGTGACTGTTTACAGACTGCTGACGGCTGGGACGATTGAAGAGAAAATTTACCACAGACAAATATTCAAGCAGTTCCTCACAAATCGAGTACTTAAAGACCCGAAGCAACGGCGTTTTTTCAAGTCAAATGATATTTATGAGCTTTTCACACTGAGCAATCCTGATGGGTCTCAGGGAACAGAAACTAGTGCCATATTTGCAGGCACCGGATCAGACGTGACGGTTCCAAAAAGGCCTACAAAATCCAAGCCAATGTCCACATCAGTACCAAGCCATAACACAGTGAAGCAGACGAAACCCAAAGAGGTTTCTGCATTTGATTCTTGGAAGGAGATCAATGCAGGCAACACAATCAAACAAGATCACACAGATGTGGATGTTGAGGATCGCGGACATGTAGCCGAACTGAAAAATGAGGCCACGCATGCAGGTCTTTCTATTAATGGCAGCTgcaatgaagagagagagagtacggCTTCAGAGGCAAACGCGATGGCATCAGCAGCTGCTCCTGCTGCCGACACATCCGTAAACCATGTACGGGAAACTGTGAGCCGTCAAGATCCGAACAGCCCTCAGAAACACAGGGAGAAAAGGAAGCATTGCGCCTCACAAGAAGGCTCCTCGTCATTGGAGGGACATAAACGGCAGGATAAGAAGCAGAAGCGCTCCCGAGATGCCAGGTTTGAGGGTCATCGCATCCCACACTTGGTAAAGAAGAGGAGGAGCAAgaaggaggatgaggaagacAATGAAGAGCAGAAGAGGAGCGATGATTATGTGCTAGCCAAGCTTTTTAAGAAATCAGGAATCCACAGCGTAATGAAGCACGATTCCATCATGGAAGCGTCCAACCCAGACTATGTGCTGGTAGAAGCAGAAGCGAACCGAGTGGCCAAGGATGCTTTGAAGGCATTGAAGAGCTCTCGGCAGCACTGCAGGCTCTCCCTCTCTGGAGCCTCGAACGGCAGTATGAGACCCCCAGAGACGCCAGTGGGAATACGGAAAAGGTTTGGTCAAAAGAAAAATCCTTTGTTGTCTGCCACACCTGTTGTGAAACCGAGCGCACCAGAGAAATGCAAGGATGCTGCTATCATAAAAAAATCCCCTGCGAAGAAAACTGCATCCACAAGTCACTTCAGTGGGGAAGGAGGTGAGGAAGAGTCCGGTTCTGCTCTGTCCTCATCCTCCCTGCTAGCAAAGATGAAAGCCAGGAATCACATAAGCTTCTCCCAAGCTCTGGAAAATCCAGAGGAGGAGGACAGTGGACAGCCAGCCTCGGTGGCGCCTCTAACCCCGACTGAGCATGACGAACTGCTGGTCGACTTGAGGAACTTTGTTGCCTTTCAGGCTCAGGTGGATGGACAAGCGAGTACTCAGGAAATACTGCAGGAGTTTACGCCCAAGCTTTCTGCTTCTCAGACTGCCGTTTTCAGGGAACTGTTGAGAAACCTGTGCGAGTTCAATAGGTCATCTGGGAAAGACGGCACCTGGAAGCTTAAAGCGGAATTCCggtaatttgtaatgtttacatGTTGTAATATAACTTTTACTGTAATGTACATTAGTTACTTATTTTCTGGCTGTTACATTTGTCCTGTGAAATACCTGAAACCGAATGTTTCTATTTCGGAAGGTGAATATACAAAGTTAAGTCTTATCGGTGATCCAGTTTTTAATGATATctaattatagtattttatgTGGGAATGGTGCTGTTGGCGATAAAAGGGATTTATTATTATCCTCAATGCATCGACCGTAagttcattaaaacatgttaattaataAGTACAGGTACGTTAATAAACCTAcctatattgttaataatagtGTTATTGAGAACACTACCAATTCAACAAAATGGAAACAGTGGATAAATGTActtgaatatttgaataatatttcagattttgtaaGCTATAAAAAGGAATCAGAATCCTAAAACAACATGCATAACAATATCTACCTCAGCACTGTTTTATTACTGTCAAGAAAGAAAATTGATTACGTGTTCTGAAATGGAAAGTGAAGAGAACAGAATTTgagtaataaaaagaaatgttgaAACGCTCTGAGATTTGGTTTTCCCTCTGTAAAAATAGGGAAGACAAAGTACCGAAACAGAATAGTGGAAACACAGATAGGATGCGAGTGTCT

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K10841 ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003020 True 4921 mRNA 0.48 20 9901267 9920544

Neighbor

gene id symbol gene type direction distance location
AMCG00003018 NA coding upstream 158428 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 267909 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 317382 9579599 ~ 9583885 (+)
AMCG00003008 NA coding upstream 325632 9562280 ~ 9575635 (+)
AMCG00003002 LOC108426803,LOC107743512,LOC107726964,LOC107655430,LOC107559324,LOC107601875 coding upstream 392970 9494051 ~ 9508297 (+)
AMCG00003023 LOC107552681 coding downstream 3137 9923681 ~ 9926024 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding downstream 8895 9929439 ~ 9937381 (+)
AMCG00003026 NA coding downstream 45412 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 76022 9996566 ~ 9997258 (+)
AMCG00003032 NA coding downstream 113380 10033924 ~ 10038457 (+)
G140192 NA non-coding upstream 113198 9787747 ~ 9788069 (+)
G140190 NA non-coding upstream 115475 9781934 ~ 9785792 (+)
G140188 NA non-coding upstream 128202 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 170404 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 754695 9146301 ~ 9146572 (+)
G140223 NA non-coding downstream 18312 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 58688 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 82288 10002832 ~ 10003519 (+)
G140263 NA non-coding downstream 97434 10017978 ~ 10018198 (+)
G140264 NA non-coding downstream 98061 10018605 ~ 10018823 (+)
AMCG00003019 NA other upstream 47814 9844776 ~ 9853453 (+)
G140189 NA other upstream 120815 9778250 ~ 9780452 (+)
G140030 NA other upstream 570803 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 584634 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 657168 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 760227 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 834357 10754901 ~ 10756840 (+)
G140613 NA other downstream 1289029 11209573 ~ 11212111 (+)
G140693 NA other downstream 1565647 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2451455 12371999 ~ 12678159 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location