AMCG00003023 (LOC107552681)


Basic Information

Item Value
gene id AMCG00003023
gene name LOC107552681
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9923681 ~ 9926024 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003023
ATGCCGCCCCGGTGCCTGTGGCTCTGCGCTCTGCTCACAGCGCTGGCGCAGCCCGCGGCGCCGCTCCGGACCGGGGAGGAGGTGTCCCGGGCCATCCGGAGACTGCAGGACATCTTCGACATGGGGGACGTGGCTCCAAACAACCCCCCTCACAGGAAGGCACCGCAGTTCATGCTGGAGTTGTTCAATGCGGTGGCCGACTCCCACGGCCGGACCAAGGAGCCGGGGCTGCTGCAGGGCAACGTCGTGCGCAGTTTTGAAGATAAAGGGCATCCCGAGCGCACCTATCACTCCTTCAACCTGTCGTCCTTCGGGAAAGAGGAGATGATGATCAAAGCGGAACTTCGGATATTTAGACACAAGCAAGCTCTGTCTGAAAAATCTTTTGGACACCATTTTTATAAAGTTGATATTTATGTGTTACTGGACAGCGGATTGAAGCCCTGGAGTGGGAACCTGATTGCGTCCAGATTATTGCCCCTGTACACCCAAGGGTGGGAAGTGTTTAATGTCACACAGACGGTTTCAAAATGGATTCAGGACAGCGACTCGAATCATGGCTTTCTGGTCGTCACCGCACTGCCCTCTGGGAATTCGCTGGACTCCAGCATGGTCCAGGTGGACAGAGGTCAAAAGCAGCGTGATGGGAAACACGCTTTCTTGGTTATTTTCTCGGATGACGCTAGAAGGGGATCAAAACCAAATCTCTCACATTTTCCAGGTCCGAAAGCTGCACCTAAAGCTGTTGCAGCCCCGGTCTTGGCCCAGGGTGGAAGTGTACCTCCTTCAGACAAGGAGCACAGAAGGAGAAAAGTCCGTTCTGCTCCATATTACATTGAAGGCCGTCGGACATCATGCAAAAGGTTTCCTCTGTATGTGGACTTTGAGGAGATTGGATGGTCAGGGTGGATCATCTCACCACGGGGTTACAACGCTTACCACTGCAAGGGCGCTTGCCCTTTCCCACTTGGAGAAGGCTTAAGAGCTACCAACCATGCTACTGTGCAGTCCATTGTTTATGCTCTGAAGCTGTCGAAAGAGGTGGAGACCCCTTGCTGTGTACCAGACAAACTACACTCCATTAACCTTCTGTATTTTGATGATGAAGAAAATGTAGTCCTTAAACAGTATGACGATATGGTCGCGGTTAGCTGTGGCTGTCATTAA

Function

NR:

description
PREDICTED: bone morphogenetic protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003023 True 1167 mRNA 0.53 5 9923681 9926024

Neighbor

gene id symbol gene type direction distance location
AMCG00003020 NA coding upstream 3137 9901267 ~ 9920544 (+)
AMCG00003018 NA coding upstream 180842 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 290323 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 339796 9579599 ~ 9583885 (+)
AMCG00003008 NA coding upstream 348046 9562280 ~ 9575635 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding downstream 3415 9929439 ~ 9937381 (+)
AMCG00003026 NA coding downstream 39932 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 70542 9996566 ~ 9997258 (+)
AMCG00003032 NA coding downstream 107900 10033924 ~ 10038457 (+)
AMCG00003033 arhgap22,LOC108443345,LOC103382122 coding downstream 120713 10046737 ~ 10048774 (+)
G140192 NA non-coding upstream 135612 9787747 ~ 9788069 (+)
G140190 NA non-coding upstream 137889 9781934 ~ 9785792 (+)
G140188 NA non-coding upstream 150616 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 192818 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 777109 9146301 ~ 9146572 (+)
G140223 NA non-coding downstream 12832 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 53208 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 76808 10002832 ~ 10003519 (+)
G140263 NA non-coding downstream 91954 10017978 ~ 10018198 (+)
G140264 NA non-coding downstream 92581 10018605 ~ 10018823 (+)
AMCG00003019 NA other upstream 70228 9844776 ~ 9853453 (+)
G140189 NA other upstream 143229 9778250 ~ 9780452 (+)
G140030 NA other upstream 593217 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 607048 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 679582 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 754747 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 828877 10754901 ~ 10756840 (+)
G140613 NA other downstream 1283549 11209573 ~ 11212111 (+)
G140693 NA other downstream 1560167 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2445975 12371999 ~ 12678159 (+)

Expression


Co-expression Network