AMCG00003024 (drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808)


Basic Information

Item Value
gene id AMCG00003024
gene name drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 9929439 ~ 9937381 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003024
tgtgtgtgtgtgtgagtgtgagtgtgtgtgtgtgtgtgtgtgagtgtgtgtgtgactttgcCGGTAACACActcagcagcagtagcagcttGCATCTTCCCAAAGGCTATCACCTCGGTTCTGGTTCATTTCCAGGAAACAAATAGATTTAAAGCAGATCGTCCAAAAAAGTTTTGCCAcaggacacagcaatgttttaCTTTCATTGTCCTCCGCAATTAGATGGGGAATGCTGTAGGACTAATACTTTGAATAGCAGCGGTTTTGGAAATCACTCTACAGGGGACTTTGATGATGGTTTTCTACGAAGGAAACAACGCAGAAATAGAACAACGTTTACATTACAGCAGTTGGAAGCGTTGGAAGCAGTTTTCGCTCAGACTCATTATCCAGATGTTTTCACCAGAGAAGAGCtggcaatgaaaataaacctgACGGAAGCCCGCGTCCAGGTGTGGTTCCAGAACCGGCGAGCCAAGTGGAGAAAAACGGAAAGAGGCAGCTCGGACCAAGAGGGGAGCAAAGAGCCGCTGAGCGACGGGACGCCGCCTGTGCGCAACTTGAGCTCCCCGTCCCCCATTGACCAGGGCAGGAGCAAAAAGGAGCCGCTGGAAATGCAACAGAGtATTAACAGGACCGTTGGTCCCGGTGGCCCGTTTTTCCCGTCCTGTCTGCCCGGGACTCTGCTCAACACCGCCACTTACGCGCAGGCGTTGTCTCAAGTTGCAACTCTGAAGGGGAGTCCTCTCTGCTCTTGCTGTGTGCCGGACCCCATGGGCCTTTCCTTCCTCCCCACGTACGGATGCCAGAGTAACCGGACAGCCAGCGTGGCAGCCCTGCGCATGAAGGCCCGGGAACACTCGGAGGCCGTGCTCCAGTCTGCCAACCTCCTCACCACCAGTGGCAGCAGTCCCAGCCCCACAGCCAAACCGTCCACACAGGAAAGCAGCCCGGACAAGGCAAACCGCTCCAAGGAACAGCtcgaaaagaaaagaaacttgtGAGAGATCCGTGCTGCTCACTGTGCATCAGGACAGACAGGCGGACTCGGTGCACCCGGAATTGCAAACAGAATGGGTTTTGAGCCTTTGCTTTAACACACTCATCTCGTCTTTCTCCTGAATTTCAAGAAAACTCACCTGAAGatcagttttttcttcttccaaatgagactatttatttatttatttatgtatgtatttatttatgaaatgacTAGTTCTGTTTCTGTATGTGCATATGTTCAAAGTGCTTTTCACAGTAAAATAATCTCTGTTAATGGTAAGCAAAATTATTGTGATACAAAACACTAATTGGAAACAAGGGGGTCTCATGATTGTTTTGGTAAAGAGTGTTCATTTTCCCAgtatgttcatttatttgtaattctgTGTTTAGACATCTGCATCCTGTAAGTGAAACAGATTCTGATGTCATGAAGGAAATGAAGAGTTTCTGTATCCCTGGTTATCAGCAAGACCAGTTCTGTATCAGTAGTTACTCTACTTCCataatgacatttgttttgcgTTAATCTGTAGGTATTTACAGAGAAAATgggcaaatatatattttgctttcagCTGATTATCATTAATAGATTTTACTCAGTTTTAGAAAATGGATTATGCATTTATATGTGTCAAGAAGGCTTAACACTAGAAATGGATCTCTTTTCTGTCACTTTTAGACTGTTATGTTCTATAAATGAAGGATAGTTGTTCTGGTAtgtttgtgggtttgttttaatttcacaactGTGCTTTACATTTGGTTTCTGCTCATTATAAATATACTATGTACCATCAGTTCCACCTCACATTTTCAGCTGACCATACTTTACTCCTGTACTGAcgtgttttaaaacaattaaagatgtAGGCGTTTATGTACATCTCCTGTAGCCTATTGCTTGGGCCATCTGGCtctgattaattattaatttacttctCTGTATACCTAGAGGAAAAACTGTGAGAAAGAAGCAATGGTGGGTCTTATCCTTATTTACTTTTAGAAACATCaccatttttcaaatttgatactctaccacttttttttttcctatcttATAAAAGTATAGCTTTAGTTTTTCAgttgtaatttttgtattatcttgGTCCTCTTGAACTCCGGTCTTGCCTATATTCCTTGATTCTGTCTGATTAAATtcttatggttttttttttttctttcttacagaAAGGCACATAAATAAGAGAACGGTTGAGCAAATTAAGAATACTTAACAGCATTGCATATGAAAAGTAGTTAGGCTGATTAAATTTTGTGTCCTTGAGGATTTTCGGGAAATTACTTTTGATCGTCAATAACACAATTAAGTAAACTACACGCACATTAGCATGAATAATTGATAAGAAATTATGTATTACGACGAAGTACTGATTTAATAATTCATGATGCGACACCCTGGTGACTCCTCAGAACCAGATAACGTCAAAGGTCTTTCCTGATACAACTGGGCACACTGTGCACTTGCAGACTGTATGGTTTGACTGtgtcttaaaaataatagtaaaaataataatagtaattattataataatgtggcACATGCATGATTTTATgttcaaattatattaataaaattaaggACTCGTTTAAATCAGTTGGTCTTTATTTGTCTTGAAGGACAGGCATCTGCTGTTATGTGTATTGTAATTGTGAA

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

NR:

description
PREDICTED: dorsal root ganglia homeobox protein-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K24895 DRGX, PRRXL1; dorsal root ganglia homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003024 True 2689 mRNA 0.41 7 9929439 9937381

Neighbor

gene id symbol gene type direction distance location
AMCG00003023 LOC107552681 coding upstream 3415 9923681 ~ 9926024 (+)
AMCG00003020 NA coding upstream 8895 9901267 ~ 9920544 (+)
AMCG00003018 NA coding upstream 186600 9742438 ~ 9742839 (+)
AMCG00003007 NA coding upstream 296081 9629812 ~ 9633358 (+)
AMCG00003009 LOC108263345,LOC107725471,LOC107666491,LOC107601865,LOC108426813 coding upstream 345554 9579599 ~ 9583885 (+)
AMCG00003026 NA coding downstream 28575 9965956 ~ 9976662 (+)
AMCG00003025 NA coding downstream 59185 9996566 ~ 9997258 (+)
AMCG00003032 NA coding downstream 96543 10033924 ~ 10038457 (+)
AMCG00003033 arhgap22,LOC108443345,LOC103382122 coding downstream 109356 10046737 ~ 10048774 (+)
AMCG00003031 NA coding downstream 130740 10068121 ~ 10077255 (+)
G140192 NA non-coding upstream 141370 9787747 ~ 9788069 (+)
G140190 NA non-coding upstream 143647 9781934 ~ 9785792 (+)
G140188 NA non-coding upstream 156374 9767086 ~ 9773065 (+)
G140156 NA non-coding upstream 198576 9730648 ~ 9730863 (+)
G140002 NA non-coding upstream 782867 9146301 ~ 9146572 (+)
G140223 NA non-coding downstream 1475 9938856 ~ 9960116 (+)
G140250 NA non-coding downstream 41851 9979232 ~ 9979445 (+)
G140260 NA non-coding downstream 65451 10002832 ~ 10003519 (+)
G140263 NA non-coding downstream 80597 10017978 ~ 10018198 (+)
G140264 NA non-coding downstream 81224 10018605 ~ 10018823 (+)
AMCG00003019 NA other upstream 75986 9844776 ~ 9853453 (+)
G140189 NA other upstream 148987 9778250 ~ 9780452 (+)
G140030 NA other upstream 598975 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 612806 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 685340 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 743390 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 817520 10754901 ~ 10756840 (+)
G140613 NA other downstream 1272192 11209573 ~ 11212111 (+)
G140693 NA other downstream 1548810 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2434618 12371999 ~ 12678159 (+)

Expression


Co-expression Network