AMCG00003030


Basic Information

Item Value
gene id AMCG00003030
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10176642 ~ 10181642 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003030
ATGAAAGGGGCAAGAACTCTCTTTTTTGTGGCCACGCTTGTACTCTTCAGCAATGCTTTTGCTGACACCTCATCATTTCAACCTACCTTGGTGCTGGACATGGCTAAAGTTCTCCTCAACAACTACTGCTTTCCGGAGAACCTAATTGGAATGCAAGAGGAAATAGAGCGAGCAATAAGCAGCGGTGAAATTCTTCAGATATCCGATCCAAAAACACTTGCATCTCTGTTGACAGCTGGTGTACAAGGGGCGCTCAGCGATCCACGGCTTGTTGTTTCCTATGAGCCCAATGCTTCACCTTCAACACCGATTGTCTTTCCACCTCTTCCACCTGAGCAGCTGATACACATCATCAAGAATTCAGTCAAGTATGAAGTCCTGGAGAACAATATCGGCTACTTAAGAATTGACCATATTATCGGAAAGGAAATGATTGATAAAGTGGGCCCAGTTCTTGTAGACAGTGTCTGGAACCATGTTATACAGACTTCTTCATTAATTCTGGATCTGCGCTACAGCTCAACAGGACATATATCTGGCATTCCTTTCATTGTGTCCTACTTCACCAAAGCTGAACCACTCATTCACATTGACACCGTGTATGATCGTCCTTCTAATACAACAAAGGAGATGTGGACACTGTCTTCTGTTTTAGGACAGAGGTATGGCAAAGACAAAGACGTCATCATTCTAACAAGCAAGGAGACCAAGGGTGTTGCAGAAGACGTAGCCTACACTTTAAAGCACATGAACAGAGCTATCACTGTAGGGGAAAGGTCAGCTGGTGGATCTCTGAATATCGAAAAGATGAAGATAGGAGATTCTGATTTTTATATCACCGTGCCCGTTTCAAGGTCTATTAACCCCATTACAGGACAAAGCTGGGAAGTAAACGGCGTATTTCCATGTGTAACTGTAAATTCGGAGGATGCTCTTGAGAAAGCCAGATCAATTCTGGCCGCGAGAAATGCCGTTCCTAAAGCAGTCCGGTCTATCTCTGACATCATTAAAAGCTACTACTCCTTTACAGATAGGGTTCCGGCTCTGCTTCACCACATTTCATTAATTGATTTCTCCTTTGTCATTTCAGAAGAAGACATAGCTACCAAACTAAACCATGAGATCCAGTCTGTGTCTGAAGACCCCCGTTTAATCATCAAAGTCATGACGGAACCTCCTGTCACCATCGACAGCTCTCCTGCTGTGGACAAACTACCAGACAATCCAGATTTCCTTCAGGCTATAGTGGACACTGTTTTCAAAGTCACCATTCTGCCTGGGAATACAGGGTACCTTAGGTTTGACGAGTTTGGTGACGCTTCAATGTTACAAAAACTGGGAGAAAAGATTGTCAAAAAAGTATGGGACCCCATCAAAGACACAGAGAACCTCATAATAGATATACGATACAACACAGGGGGCCCATCAGCTGCTGTACCCATTCTTTTGTCTTACTTTCAAGACCCAACTCCAGCAGTTCATTTCTTCACAATTTACAACAGAATCACCAACTCCACTACTGATTATTACACACTGCCACAACTAATTGGGCAACCATATGGGGCAAAGCGAGGCGTATATGTGCTGACAAGTCACTACACCGCAACTGCAGGAGAGGAGTTTGCGTACCTGATGCAGTCCCTGAACCGAGCCACAGTCATCGGCGAAATTACGTCAGGCACATTGCTTCACTCCAGATCATTTCAAATAGAAGGCACGGATATCGTCATCACTGTTCCAGTCATAAATTTTATTGATAATAATGGGGAATGCTGGCTAGGTGGAGGCGTTGTCCCAGATGCGATAGTATTGGCTGATGAAGCAATGGAAAAAGCACACGAAATCATAGCATTTCATCCAGAGGTTCAGGAGTTGGTGGTCCAGGCAGGGGAATTGTTGGAAGCTCATTATGCCATCCCTGAAGTTgctacaaaagtaaaaaaagtcCTGGATACAAAATTGACACAAGGCATATATCGATCTGTGGTGGACTTTGAGTCCCTGGACTCCCAGCTGACTTCAGACCTACAGGAGACATCAGGTGACCATCGCCTGCACGTCTTCTACAGTGATATTGAACCTGAAACATTGGAAGATCAGGATTCCAAAATCCCAACTGATGAAGAACTTGGGTATATTATAGATGCTCTGTTCAAAATTGAAGTCCTGCCAGGAAATGTAGGCTACCTAAGATTTGACTTGATGGCAGATGCAGATATAATTAGGGCTATTGGACCTCAACTTGTCAACCTAGTCTGGAACAAACTAATTAACACTGACACTTTAATCATTGATATGAGGTACAACTCTGGGGGCTATTCAACAGCTGTTCCAATTTTGTGCACCTACTTTTTTGATGAAGAACCTCTTCGTCACCTTTACACAGTGTTTGACCGATCCACCACCACCATGACCGAGATAATGACTCTGCCGTTGGTTTTGGGACAAAGATATGGCTCCAAGAAAAGCCTTTTCATTCTCACAAGCCACATGACAGGTTCAGCTGGAGAAGCTTTTACAAGAGCATTGAAAGACCTCAATAGAGCCACAGTTATCGGAGAACCAACCGTGGGAGGCACTTTGTCAATAGGTACCTACCGGATTGGGAATAGCAATTTATACGTCTCAATTCCCAATCAAGTTGTCCTGAGTGCAGTGACAGGAAAAGTCTGGAGCGTTTCTGGTGTTGAGCCACATGTTGCAGTTCAAGCTAATGATGCAATGAATGTCGCCCTCCATATCATTAATCTCAGATCCAAAATCTCCTCTATGGTCCAGACAGCCGGAAAGCTGGTTGCTGACAATTATGCCTTTCCCCAGACTGGTGCAGATGTCGCAGCAAAACTGCTCGCCCTCAATAAGAAGGGTGACTATAACATGATGAATTCTGAGGTTCAGCTCGCCGAAAAACTCACCGCTGACTTGCAAGAACTATCCGGGGACAGACACTTAAAGGCTATTCACATACCAGAGCACGCCAAAGGCAAAATCCCCGGAGCAGCACCTCTACAGttgccATCGCCTGAGATTTTTGAAGATTTGATCAAATTCTCTTTCCATACGGATGTATTTGAGAACAACATTGGGTACCTTCGATTTGACATGTTTGGGGAGTTTGATCTCATCTCTCAGGTGTCTGAGTTACTCGTGGAACATGTGTGGAAGAAAATAGTGGACACAGATGCTCTGATTATTGATCTTAGATATAACATTGGAGGACCCACTTCAGCAATTGCAGGAATCTGCTCCTATTTCTTTGacaaaaatcaaaatattcTTCTGGACAAAATCTATGACAGAACTTCTGATTCAACAAGCGATATCAGGACCTTGCCTGCATTAACTGgggaAAGATATGGTTCCAAGAAGAGTTTGATCATACTGACAAGTGGCATGACAGCGGGGGCAGCCGAGGAGTTTGTCTACATCATGAAGAAGCTTGGAAGAGCTATGATTATTGGGCAAGTTACCAGTGGTGGTTGTCACCCACCACAGACATACCAAGTGGACGAAACCAACCTGTACTTGACCATGCCCGTCGTCCACTCAGACAACTCCCTGGGCCCCTCCTGGGAGGGCGCTGGAGTTATTCCTCATATAGAGGTGGCCACAGACAAAGCTCTAGACAAAGCCAAAGAGTTACTAAATAATCACTTGCAT

Function

GO: NA

KEGG:

id description
K23911 RBP3; retinol-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003030 True 3660 mRNA 0.44 4 10176642 10181642

Neighbor

gene id symbol gene type direction distance location
AMCG00003036 NA coding upstream 5281 10169506 ~ 10171361 (+)
AMCG00003035 NA coding upstream 9746 10164083 ~ 10166896 (+)
AMCG00003034 NA coding upstream 47699 10098459 ~ 10128943 (+)
AMCG00003031 NA coding upstream 99387 10068121 ~ 10077255 (+)
AMCG00003033 arhgap22,LOC108443345,LOC103382122 coding upstream 127868 10046737 ~ 10048774 (+)
AMCG00003043 antxr1c,LOC105893913,LOC107708998,LOC107693662,LOC107720085,LOC107653967 coding downstream 13895 10195537 ~ 10226031 (+)
AMCG00003044 NA coding downstream 79698 10261340 ~ 10286055 (+)
AMCG00003045 NA coding downstream 104513 10286155 ~ 10288094 (+)
AMCG00003051 pi4k2a,LOC105896299 coding downstream 127430 10309072 ~ 10317799 (+)
AMCG00003050 NA coding downstream 144072 10325714 ~ 10326214 (+)
G140269 NA non-coding upstream 146119 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 151493 10024939 ~ 10025149 (+)
G140266 NA non-coding upstream 155185 10020824 ~ 10021457 (+)
G140265 NA non-coding upstream 157023 10019415 ~ 10019619 (+)
G140264 NA non-coding upstream 157819 10018605 ~ 10018823 (+)
G140331 NA non-coding downstream 53193 10234835 ~ 10237083 (+)
G140340 ubtd1b,LOC106578996 non-coding downstream 66193 10247835 ~ 10251525 (+)
G140351 NA non-coding downstream 106795 10288437 ~ 10289935 (+)
G140434 NA non-coding downstream 443121 10624763 ~ 10627882 (+)
G140435 loxl4,LOC103368016 non-coding downstream 450621 10632263 ~ 10632489 (+)
AMCG00003019 NA other upstream 323189 9844776 ~ 9853453 (+)
G140189 NA other upstream 396190 9778250 ~ 9780452 (+)
G140030 NA other upstream 846178 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 860009 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 932543 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 499129 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 573259 10754901 ~ 10756840 (+)
G140613 NA other downstream 1027931 11209573 ~ 11212111 (+)
G140693 NA other downstream 1304549 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2190357 12371999 ~ 12678159 (+)

Expression


Co-expression Network