AMCG00003031


Basic Information

Item Value
gene id AMCG00003031
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10068121 ~ 10077255 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003031
CATGTCTTGGTCTTCTAGGTGGGACAGGCGAGCGTGACAGGGCGGCCATCAATCATGAAGCCTTCTTGCTCATGGCGAACTCGCAGAATGACATGGAAGACTGGGTGAAAGCCATCCGACGAGTCATCTGGGCTCCTTTTGGAGGAGGAATATTTGGCCAGCGTTTAGAGGACACCGTGCAATACGAGAAAAAGTTTGGCCAGCGCCTGGCTCCCTTACTGGTGGAGCAGTGTGTGGATTTCATAAGAGAGCAAGGCTTAGATGAAGAGGGGCTCTTTCGCATGCCAGGCCAAGCCAACTTAGTCAAGGAACTCCAGGACGCCTTTGATTGCGGAGACAAACCTCTTTTTGATAgTAACACTGATGTCCACACAGTGGCATCTCTCCTGAAGTTATATCTCCGCGAACTGCCTGAGCCTGTCATCCCCTTTGCCAAGTATGAAGACTTTCTCTCCTGCGCTCAACTGTTAGCCAAGGATGAGGAGGAGGGCAAACAGGAGCTGGTTAAACAGGTGAAGACCCTTCCTCAGGCTAATTACAACCTTCTTAAGTATATATGCAAATTCCTTGATGAAGTTCAGTCACATTCAAACGAAAATAAAATGAGTGTTCAGAACCTTGCCACAGTTTTTGGACCAAATATACTTCGACCTAAAATGGAAGACCCATTGACTATCATGGAAGGGACCTCTCTTGTACAACACCTCATGACCGTGCTCATCAGCGAACATGAACGGCTGTACATCTGCACCGACACCGAGGCCTCTGTGGGGCAGCAGGAGGTGAGAGCTCAGGCCCAGCGCAGCATGGTGGAGTGGATCTCTGAGGAAGACCTGCAGGGCTGCCCAGCCAAGAGCAAGGCCTCCAACATTAGTGAGGACCTCTGTAGCAGTGCCACCTCACTGGACGTTAACGTCAGCACTCCTGTAACTGTGCCCAAACTCACATCTCAGGCAAAGGGAGAGGCGGCCCTCAGCCCCAGTAAACAGATTAAACCTCTTCCGACTTGGAAATATTCCTTCAAAGGTTCTGGGGTGAGAGCTAGCCCGGCCAAGCTGGGTGGGTCCTCTGTGGATATCCCCAACTTGTCATCTAGTGGGAACTGGTTAATAAACGGGTTGTCATCCCTGCGTGGCCACAGACGGACTTCCTCAGGAGAACGAGTGAAAGACTCAGGGTCCTCCCAAAGACTGTCAACGTACGACAACGTGACGGTGTCCAGTCTGAGCGTGCCAAGTGTAGCCAGTACACCGTGGTCCACATCCTCCTGTGACATCTCTGTCCCAGAGTCTGGGAGCAGTTGCAATGCCAGTGATTCTTCAGGGCTCGACTGTGGGAAAGTGGAGTGGTGTGAACCAGTGTCTCAGGTGCAGAGCGAGAAAAAGCCCTCAGAGCTGGAGGACAGCAATGAGAGGCTGGAACTGTGTCTGGACAGTTGCAGCGAGGACAGTAACCAAGTGGCATCATCAAATGAGGCTGCCAGTGGCTCAAAAGCCCTCACCAGCTTGGTCACAGAGCTTAAGGATGAATTGAGGAAGCAGAAGATGGAGTATGAAACCAGGATACGAAGACTGGAAGACTCAAGTACGTCGCTGTCTGTGCAAATGGAGAGGCTGGAGGAGGAGTTGGATCAAGAAAGGAAGAGATACAGCATGCTTGAAATCAAACTTCGCAATTCAGAACGAGCGCGTGAGGATGCCGAGAGAAGAAACCAACTGCTGCAGAAGGAAATGGAGGAGTTTTTCTCGACACTGGGGGATTTAACCCTGGGAACAAGGACAAGCAAAGTTTGAAATCCAATTTAAGAGTCCTGGAAGGTGACATTTGTAGAAGACTGTGTTTTTAGCTTCCTGTGCTCATGTATCATGAGTATTCTGAAGCAATTCCAGACTGTTTTCTTACAGTACTTTGTCTTTGGATTTATATATGCTGTTATTCTGTATATCAGGACTTTTTTTATGTATCTAAAATGTAAGGTTACAAGGTATGCCTAAATTATTGTACTACTGTAATCATATGGCCTTTGTATATGCACAAACACAATACCAAAGCATGAATTTCATTGTAAACATTTGAACTGGAATACTAGCCATAGTGGTACCTGTACATGAAGCAGATGAAAAGTAACTTctgataaaagaaagaaaatgagaaagaaagaatcaAACTAAATGGGTTTCCCTGACTGTGCCTTTTATGGTTGTTGCATGGGATGGAGAAAACATTACTTGACCATAGTGGAGATCAAAGTTTAACCATTCCAGAGCCTATACTGAATCCACAGCTTCCGTTATGCTTTCCTTCCTATCCATCAGCCCCATTTTTTGTTTAGACATTAGAAAGACACTACAAATGCTGGTGACATCATCTAATGgctaaaaatacagaaaaaaacatatctgaatTTGATATTTAAGTTCAGCCTTATCCATAACCCAACACTTATTTTGACAGATAGCTGTAACTTTATCCCTAAACCAACATGCAACCCTGGCCCCAACGCAGTCTCACATCTTAATTACCAACAAGCACACCCTAAACTGAAGCATTGATCTAGGCCTAAGCTGAACTATAGCCTTATTCGGTCTGTACACCCCTAACCTTGGCTTTAGTCTTCAGCCTAACCCCGATCCACAAACCCTATCTATAGGGAGACAGAGGACAGTTAAGAGACTGTGTATTATTTTACCCTAGAAGACCCTTTTATCCAGCACTGGCCTACATCTCAGTATACACACAGTAAGATACTATATAGTAAATAATTTCTATTTAATCAGGTGCTGTGGCTTTAACTACTGTTTCTTGAGGCATCGTTGTActgtaatcaaaataaactgctgttttaataatttacatttcacttcTGACCCTGGTCCACTTACACAAAGAGCTACAATGAAGCTGAGAAACACAGACCAGCTGGGTAAAACTGAATTTGATTGTACAAAGTAGTAAAAAtacttaagaaaaaataaatcaagaaccTTACATGTTTGTAAACAATGTTTGTACTTACATGGTGTCCTTCTGTAAGTGTCTAGTTATATTTTGTGAAAGCAGATGGAGGATTGGAGCAAGTGTGCGAGCTCCTGTACTATGTGGATGGTGTTAATGACCCTAACTGCCCAGTGgaggcaaaaaaagaaatgttgcaTTGCATCTTAGACTCATGTCTGTATTATAAACAGTGTAATCTTTTGCAAAGTGCCAAAACGACTTGTTTGTGCTTGTAAATGGATCTTTTGAACTGAACAACTTGAACTTGGATTAACACTTgaagtattatttttcacatagtaaaacaaactattattcaaTGACTTTG

Function

GO: NA

KEGG:

id description
K20642 ARHGAP22_24_25; Rho GTPase-activating protein 22/24/25

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003031 True 3325 mRNA 0.44 7 10068121 10077255

Neighbor

gene id symbol gene type direction distance location
AMCG00003033 arhgap22,LOC108443345,LOC103382122 coding upstream 19347 10046737 ~ 10048774 (+)
AMCG00003032 NA coding upstream 29664 10033924 ~ 10038457 (+)
AMCG00003025 NA coding upstream 70863 9996566 ~ 9997258 (+)
AMCG00003026 NA coding upstream 91459 9965956 ~ 9976662 (+)
AMCG00003024 drgx,LOC107548637,LOC107673892,LOC107588616,LOC107708289,LOC107668808 coding upstream 130740 9929439 ~ 9937381 (+)
AMCG00003034 NA coding downstream 21204 10098459 ~ 10128943 (+)
AMCG00003035 NA coding downstream 86828 10164083 ~ 10166896 (+)
AMCG00003036 NA coding downstream 92251 10169506 ~ 10171361 (+)
AMCG00003030 NA coding downstream 99387 10176642 ~ 10181642 (+)
AMCG00003043 antxr1c,LOC105893913,LOC107708998,LOC107693662,LOC107720085,LOC107653967 coding downstream 118282 10195537 ~ 10226031 (+)
G140269 NA non-coding upstream 37598 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 42972 10024939 ~ 10025149 (+)
G140266 NA non-coding upstream 46664 10020824 ~ 10021457 (+)
G140265 NA non-coding upstream 48502 10019415 ~ 10019619 (+)
G140264 NA non-coding upstream 49298 10018605 ~ 10018823 (+)
G140331 NA non-coding downstream 157580 10234835 ~ 10237083 (+)
G140340 ubtd1b,LOC106578996 non-coding downstream 170580 10247835 ~ 10251525 (+)
G140351 NA non-coding downstream 211182 10288437 ~ 10289935 (+)
G140434 NA non-coding downstream 547508 10624763 ~ 10627882 (+)
G140435 loxl4,LOC103368016 non-coding downstream 555008 10632263 ~ 10632489 (+)
AMCG00003019 NA other upstream 214668 9844776 ~ 9853453 (+)
G140189 NA other upstream 287669 9778250 ~ 9780452 (+)
G140030 NA other upstream 737657 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 751488 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 824022 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 603516 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 677646 10754901 ~ 10756840 (+)
G140613 NA other downstream 1132318 11209573 ~ 11212111 (+)
G140693 NA other downstream 1408936 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2294744 12371999 ~ 12678159 (+)

Expression


Co-expression Network