AMCG00003045


Basic Information

Item Value
gene id AMCG00003045
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10286155 ~ 10288094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003045
atcatatatatattatttcatagTGTTATATGGAacttatattaattaaatattacaaacataatTAGACCCAGGATGAAGTCATTATTTGCACTGGTTTATGGGACATGTAGTCCACTGATTCTTCATGACACCACATGTGGACATGTGTTTATGTGGCGGAGCTTCTGAAAAATAACGTTTGCTTTAAagcttgttgtttttggttttagttgCATGTTTCTTCTACAAGATAATGGCATTCAGTTTCAATTTCGACGTGCATTTAGAAACGGGGGATTGTCCCGAGGAGACAGACATGATTCAAGGCGATCACAGTCTGCAAGATCTGGAAAGTAAACCTAGACAGCCTGACAATCCCACCCAGGACTCTGTGAAAGAGGCACAGGAGCACAGCCCCCCCCTGAACTGCCAACCCCTGCTGGAAAACACTGTCTGTGAGACCTTCTCACTGGGATCTCTGCCCCCCATCCACTACCTGAACGAGTCTGTGCTGGAGCAGACCGCATCAGAGCGCCCTGACAAGGAGAAGATCCTGTCCCAGACTGTGGCTTCACACTCTGATCTCATCTCCGGAGTCTACGAGGGCGGTCTGCGCATTTGGGAATGCACCTTTGACCTCCTGGAGTACGTGGAGAGCCATGGTGTGACTTTCGCTGGCAAGAGAGTCCTGGACCTGGGATGTGGGGCAGGATTGTTGGGTATCTTAGCCCTGAAGAGTGGGGCCCAGGAGGTTCACTTCCAGGACTATAACAGCACAGTGATTGAAGAGCTGACTTTACCCAACGTAGTGTTGAACTgtgaggatgaggaggaagaggatgagAAAGGGGAGAATACAAGCTCATCACCAAAAGGAGCCACCAAGTCCTCACTGCAGGCCGGGCTGGCCAGGTGTAGGTTCTTCTCTGGAGACTGGGAGTCCTTCCTTCCCCTCGTGTTGAGCAGCGATCCGCCTCCTCAGTACGATTTCATCTTAACTTCTGAAACCATCTACAACACGGCGTACTACCCGGCCCTGCACAACGTGTTCCACAAGCTGTTGTCCCCAGAGGGTCTGGTCTACTTAGCGACTAAGGCACATTATTTTGGTGTTGGGGGAGGATTGCACCTTTTCCAGAGTTTTGTGGAGAAGGCAAACATTTTCGATATCAAGTGCCTGGCAGATGTGGAGCAGGGGCTTCGGAGACATGTGGTAGCATTGAGCTTCAAGAAGACTGAATGAATGAGTCAAAGTCTATCCCATCTAAGAGATATTATGAGCAGTGCTAATATGACAACATGATGATGCATCACTTCAAGTACAGGACCACTGTTGCCAAGATCACCTAGGAGCCATCATGAACCgtcatgttttcttcatttctcCAAGATGTTACTGGAGCTCATACTTAATACGCTCTactgtattcaaataaaatattaaatacacaga

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0007029 endoplasmic reticulum organization biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes
ko03030 DNA replication

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003045 True 1435 mRNA 0.47 2 10286155 10288094

Neighbor

gene id symbol gene type direction distance location
AMCG00003044 NA coding upstream 100 10261340 ~ 10286055 (+)
AMCG00003043 antxr1c,LOC105893913,LOC107708998,LOC107693662,LOC107720085,LOC107653967 coding upstream 60124 10195537 ~ 10226031 (+)
AMCG00003030 NA coding upstream 104513 10176642 ~ 10181642 (+)
AMCG00003036 NA coding upstream 114794 10169506 ~ 10171361 (+)
AMCG00003035 NA coding upstream 119259 10164083 ~ 10166896 (+)
AMCG00003051 pi4k2a,LOC105896299 coding downstream 20978 10309072 ~ 10317799 (+)
AMCG00003050 NA coding downstream 37620 10325714 ~ 10326214 (+)
AMCG00003053 NA coding downstream 174182 10462276 ~ 10484842 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding downstream 255375 10543469 ~ 10565618 (+)
AMCG00003057 NA coding downstream 324412 10612506 ~ 10622148 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 34630 10247835 ~ 10251525 (+)
G140331 NA non-coding upstream 49072 10234835 ~ 10237083 (+)
G140269 NA non-coding upstream 255632 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 261006 10024939 ~ 10025149 (+)
G140266 NA non-coding upstream 264698 10020824 ~ 10021457 (+)
G140351 NA non-coding downstream 343 10288437 ~ 10289935 (+)
G140434 NA non-coding downstream 336669 10624763 ~ 10627882 (+)
G140435 loxl4,LOC103368016 non-coding downstream 344169 10632263 ~ 10632489 (+)
G140436 NA non-coding downstream 365239 10653333 ~ 10656991 (+)
G140612 NA non-coding downstream 919412 11207506 ~ 11209502 (+)
AMCG00003019 NA other upstream 432702 9844776 ~ 9853453 (+)
G140189 NA other upstream 505703 9778250 ~ 9780452 (+)
G140030 NA other upstream 955691 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 969522 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 1042056 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 392677 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 466807 10754901 ~ 10756840 (+)
G140613 NA other downstream 921479 11209573 ~ 11212111 (+)
G140693 NA other downstream 1198097 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2083905 12371999 ~ 12678159 (+)

Expression


Co-expression Network