AMCG00003049


Basic Information

Item Value
gene id AMCG00003049
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10301800 ~ 10331372 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003049
ATGGCGTCTGTGGAGCTTGTTGTAGCAACAGCTGTCTCCAGGGGAGGGGATTtgcacagagctgcagaaagCAGAGTAAACAGAGACAATAGAAAGCACCAGCTCCTTGTGACACAGACTCAGGCTCAGGAGTGTAAACACTGCAGTCCACAGCAAGAGACACACAAGCGCCACCCCCCGGAGAAGACTTCGCCTGTCCCCCGAGCTCCTGACTCCCAGCCCGGCGGCAGACAGCAGGGTTTCCGAGGAGATGACGACGCCGACAGGTTTGGGCTCGCAAAGCGGTTCAGAGTGAAGCTCTCCAGCCTGTTTGCCAGCCCCACTGACCCCCACGATGAAGCAGGCTGGAGCCGGAGCCCGCAGGCTGAGGAGAGCTGTGGTCAGCAACAGACAGAGCTGCCGGCCCATCCAAGGCTGAAGACCCGGCGTCAGGTGCCCCTTCTGGACATCCCAGAGTCTGCAATTGATAACAGGAGTTTGATTGGAGACTTCAGCAAGACCCACTTGTTTCCTGTGGAGAAGGGAGAACACCAGGACCTGCAGTATATTTCTGGACAGACAGTGGCATCTCTCCTCACAGGAGAGTACAGTCGGCAAGTGGAGGACTACCTTATTGTTGATTGCCGATACCCTTATGAGTACCAAGGAGGGCATATTAAGGGAGCTGTAAACCTTTACTGTGAAGCTCAGCTGCAGGCCGCGCTACTCCAAGACTGTGTCCAGTCTAGGCTGTCCCCCAGGGTCGCACTTCCTGACAGTCCCCCAGGCACAGCCCATCTCCCAGACAGCGGCCCTCAGACACCCAGTGCCAGCCCAGGGAGCAGATCACCGGCTGCTGCCATGCAGGAAATCCCCACTGTGAGAAGCCCACCTTCAGACAGCCCCTCGTCCAGAAAAGTGCTAGTCTTCCACTGCGAGTTCTCCTCAGAGCGGGGCCCCCGGCTCTGTCGTTATCTGAGAAAGATTGACAGGACCCTTAATGTCTATCCTCAGTTGTTTTATCCAGAGCTATATATTCTGGATGGAGGTTATAAGGAATTCTACTCCAAGTTccagAACCTATGTGAGCCCCGTGGCTATGTGAAAATGCTCCATGAAGACTTCAGTGATCAGATGCGCAGATTTCGACCAAAGAGGCGATCGCGACCCAGACAGTTTGGAAAGAAGCGAGACTTAATGGACAGCAATTGA
>TU176570
CTTGgagaaatataaacaatatataaatcataagACAGGTGAGCAAATAGCAAAGTCAATACAAATGGCCTTACTGTCAGCACAAAAAGCCTGTATAGCCTGATTGTACAGCACACTGCACCTCCGTTCAATATGAAAGGGAGATCACAGATTGACTTCACACTCATAACAATACAGGAAGGTGCATTAGAGGGGACTTCCTGATTATATTTAGCCTGAAtgaattttgcattattaaCCCTTCACCAATAAACACATCtcttatattttttctgttttctacaaTGGCTGGTTGAGGCcatgacatttctttttttttaaaggtctcCTATGTCTCCAGATCTTGAAATTGCCAAATAGCTCATGACCATGCTGACTTCAAGTTCTTCTACAACATTCCACTTCGTTGCCATTCTACATGATTTAACACAATACACTGCACTAAAATAGACTCAAAGAGCATAAGAGCAAATCATAAAATGTTACTGCTTCTGTGACACATGTGCATTAAGTATGTAGAATGTTGAATGTATACTACACAATGTATTGTAGATAggaaacatcaaaatatatctGTTTAGTTTTCAGTATATAAGATTGCTATCTAAGTTTAACATGCTTACCTAACACAAGCTATTTGTTAGAATTTGTATACAAATTtgtgcatttccattttatttttattagctcTCTTATTTATAAGGCCAGCTCACATTCCCATTTACAATGcttttcacaatattttttccaaacaaattacaataagtATTCTAGAGGGTAACTAGAGTGGACAACTGAAGTTCTCTTCTTTTCATATTTCCTGTTTAAGGAAAAGGCACAGAGGTGACATTGTTCAAGCGGTTTTAGAAATGGCATGGGGAATATCACTAACAGTCTTCAAACAGAATTGAACTTGTGtgaatattaattcaattatgcGCATATTACAAGTGGTGGAAAATAGTTCTTTAGTACAATGAAGTCTTCAGTTGGTTGACGTTCTTAAATAACAGCATGTGTGCCATTTCCTCGTGTTTACTACTCACTGTACTGTCCTCTGTGCTGAAAACAAGGGGAAcccttctttttattttctgattcagAAATGTGAATTTTTAGACTTTAGACAATCTTTTTAGACTAGATTACAGAACTAGTATTTTCTCTGAGAaaatatcatattaatattctatgcaaaatgtgaaagagcatctatattttattgtgatctGTATAGAAAAAACTTTACAAAGTAAATATACTAAGGCAGTCTCTGGAAGTTAGTTGTGTGCCCTTGAGAATGGGGCTCATTGGTCATTCTCATTGTGTTGCAAATGGCAGCTATGTCTCagattacactatgtaacacaatttttgttcctgggtagtaagtCCCATCTCCCAGACAGCGGCCCTCAGACACCCAGTGCCAGCCCAGGGAGCAGATCACCGGCTGCTGCCATGCAGGAAATCCCCACTGTGAGAAGCCCACCTTCAGACAGCCCCTCGTCCAGAAAAGTGCTAGTCTTCCACTGCGAGTTCTCCTCAGAGCGGGGCCCCCGGCTCTGTCGTTATCTGAGAAAGATTGACAGGACCCTTAATGTCTATCCTCAGTTGTTTTATCCAGAGCTATATATTCTGGATGGAGGTTATAAGGAATTCTACTCCAAGTTccagAACCTATGTGAGCCCCGTGGCTATGTGAAAATGCTCCATGAAGACTTCAGTGATCAGATGCGCAGATTTCGACCAAAGAGGCGATCGCGACCCAGACAGTTTGGAAAGAAGCGAGACTTAATGGACAGCAATTGATGGAATCTGCTGATAATCACCAGAGACACTGGCAGGCTGGGGTTAAGAGGCTCAGGAATAAACTGCCTTCTGGAAAATAAGTTTGGCCTCTGGCTATGCTCCAGCTTCAGGGCACACGTTGACTGGTTTTGGGACTGGTAAATTGTGCCAAcccataaaaatgaaaatatacctTTTAACCCACCAGCAGGGGGTGACTCTCTGCCCACACGTAGCCTTGAATCTTAATCTTGAATGTCTTCACAAccatatattaatgtatacatcCCTCATTCTAATTACTACTCATTTGTAAAACTCTCCTAATATGAAAGAAGTAAAatactctaaatatatattatcaaaagCATGTAGTAGCCTTCTTCCCCTTGGTAAGTTTCTAATAAAATGGTTCTGACTGGCATAAAGTTTCCTTTTGATTGCTTTCTGAACACTTCTTTGTGCATTCTAGACTGACACAAAG

Function

GO:

id name namespace
GO:0016311 dephosphorylation biological_process
GO:0004721 phosphoprotein phosphatase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003049 False 1191 mRNA 0.55 9 10302263 10307973
TU176570 True 2275 TUCP 0.38 4 10301800 10331372

Neighbor

gene id symbol gene type direction distance location
AMCG00003048 pgam1,pgam1b,pgam1a,LOC107548630,LOC107700858,LOC107598490,LOC107668811,LOC107673951 coding downstream 1640 10293726 ~ 10300160 (-)
AMCG00003047 exosc1,LOC107598491,LOC107700859 coding downstream 9462 10288264 ~ 10292338 (-)
AMCG00003042 NA coding downstream 15774 10275706 ~ 10286026 (-)
AMCG00003038 ubtd1,ubtd1b,LOC106589356,LOC106578996 coding downstream 39641 10247857 ~ 10262159 (-)
AMCG00003040 NA coding downstream 55168 10234532 ~ 10246632 (-)
AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding upstream 88816 10420188 ~ 10445204 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding upstream 166830 10498202 ~ 10511429 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding upstream 186495 10517867 ~ 10519484 (-)
AMCG00003055 NA coding upstream 231881 10563253 ~ 10570538 (-)
AMCG00003063 NA coding upstream 243260 10574632 ~ 10578103 (-)
G140279 NA non-coding downstream 263943 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 412174 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 448387 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 530293 9765653 ~ 9771507 (-)
G140174 NA non-coding downstream 560860 9740654 ~ 9740940 (-)
G140456 NA non-coding upstream 291234 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 321953 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 487397 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 594746 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 634160 10965532 ~ 10967602 (-)
AMCG00003017 NA other downstream 694484 9596943 ~ 9607316 (-)
G140015 NA other downstream 1064070 9236658 ~ 9237730 (-)
G140006 NA other downstream 1453960 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1807204 8485361 ~ 8494596 (-)
AMCG00002970 cj104,anapc16 other downstream 2363559 7931166 ~ 7938241 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1277091 11608463 ~ 11622649 (-)
G140758 NA other upstream 1309444 11640816 ~ 11647619 (-)
G140757 NA other upstream 1362634 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2396866 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2519649 12851021 ~ 12855341 (-)

Expression


Co-expression Network