AMCG00003050


Basic Information

Item Value
gene id AMCG00003050
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10325714 ~ 10326214 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003050
ATGCCTCCTCAGCAACCGGTGAGGAGGACAAACCTGAGCACCAACAGGGAGTTCCTCAAGAGCTTCATTGGGATCCTGAGGGTCCTACAAATCCTGCTGGGAGCCGGGCTGTGGATCACAATTGCTGCCAACAAGTATGAGGGCTCCATCCACTTTGTCCTATTTGTGGCCGTGCTCTTTTGGCTCCTGACGCTCACTCTCTACTTCCTCACGCTCCTGGACAAGCAAGACCTGGTCCCCATCTTGGGTGGGGAGCGCTGGCTGCTAAGCAACATGGTACATGACCTGTTAGCTACTCTGTTGTTCTTCGCAGCCCTGGGCATAATGATCTACAAGACCGAGAAGAACAGCTACTGCACTCTGGAGCTGTACAGGCACTCCTGCCTGTACAAGGTGTACCTCACAGCCTCCGTCTTCTCCTGCCTCTGTGCTGCTGCCTATCTTGTAACGGCCGTTTATGGCGTTTGCAGAAAGTGCAGGGGAGAACAGACTCTGGTctga

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003050 True 501 mRNA 0.54 1 10325714 10326214

Neighbor

gene id symbol gene type direction distance location
AMCG00003051 pi4k2a,LOC105896299 coding upstream 7915 10309072 ~ 10317799 (+)
AMCG00003045 NA coding upstream 37620 10286155 ~ 10288094 (+)
AMCG00003044 NA coding upstream 39659 10261340 ~ 10286055 (+)
AMCG00003043 antxr1c,LOC105893913,LOC107708998,LOC107693662,LOC107720085,LOC107653967 coding upstream 99683 10195537 ~ 10226031 (+)
AMCG00003030 NA coding upstream 144072 10176642 ~ 10181642 (+)
AMCG00003053 NA coding downstream 136062 10462276 ~ 10484842 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding downstream 217255 10543469 ~ 10565618 (+)
AMCG00003057 NA coding downstream 286292 10612506 ~ 10622148 (+)
AMCG00003065 NA coding downstream 360056 10686270 ~ 10693974 (+)
AMCG00003064 slc25a28,LOC107601050 coding downstream 379419 10705633 ~ 10719938 (+)
G140351 NA non-coding upstream 35779 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 74189 10247835 ~ 10251525 (+)
G140331 NA non-coding upstream 88631 10234835 ~ 10237083 (+)
G140269 NA non-coding upstream 295191 10030226 ~ 10030523 (+)
G140268 NA non-coding upstream 300565 10024939 ~ 10025149 (+)
G140434 NA non-coding downstream 298549 10624763 ~ 10627882 (+)
G140435 loxl4,LOC103368016 non-coding downstream 306049 10632263 ~ 10632489 (+)
G140436 NA non-coding downstream 327119 10653333 ~ 10656991 (+)
G140612 NA non-coding downstream 881292 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 919042 11245256 ~ 11247278 (+)
AMCG00003019 NA other upstream 472261 9844776 ~ 9853453 (+)
G140189 NA other upstream 545262 9778250 ~ 9780452 (+)
G140030 NA other upstream 995250 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 1009081 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 1081615 9236740 ~ 9244099 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other downstream 354557 10680771 ~ 10683612 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 428687 10754901 ~ 10756840 (+)
G140613 NA other downstream 883359 11209573 ~ 11212111 (+)
G140693 NA other downstream 1159977 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 2045785 12371999 ~ 12678159 (+)

Expression


Co-expression Network