AMCG00003052 (zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614)


Basic Information

Item Value
gene id AMCG00003052
gene name zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10420188 ~ 10445204 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003052
ATGAAGTCGGCGGGGGTCGGTGATGGTGGGCTCTTCACGGAAAGTTACTGCAACATCTGCAACGCCCAGCTCATCTCCGAGTCCCAGCGCGTCGCTCACTATGAGAGTAAGAAACATGCCAACAAAGTCCGCCTCTTCTACATGCTGCACCCTGAGGATGGGGGGCCGCCTTCAAAAAGACTGAGGCCCGATAACCCGgacAGCGACGAAAGTGAAGTGGACAGGAACAAGTGCTGTACACTCTGTAACATGTTCTTCACCTCCGCCATTGTGGCCCAATCCCACTACCAGGGCAAGACACATGCCAAGAGGGTGCGGTTGGTCCTTGGAGAGCCTCCAAGCACACCTACACCCACAGACTCCGCCCCTTCAACACCACAACCGACAGACCCGGTGCCGCCCCCCAGCTGGCCCCCAGCCAAAGATGGGGAGGCGGGGAAGTTTTGTTGCTTATGTAGCGCCTGGTTCAACAACCCACTGATGGCACAGCAGCACTATGAGGGCAAGAAGCACAAGAGGAATGCCGCCAGGGCACGGCTCCTGGAGCAGCTGGCAGGGAGCTTGGATGCCACTGAAACCACAGCTCTGCGGAACAGCTACTCGTGCAGCGTGTGCAACGTGATTCTCAACTCCATCGAGCAATACCACGCACACCTCCAGGGCTCCAAGCACCAGAATAAGTAA

Function

symbol description
zgc:171482 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4).
zmat4 Enables identical protein binding activity. Predicted to be located in nucleus.

NR:

description
uncharacterized protein LOC796610 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003052 True 684 mRNA 0.57 5 10420188 10445204

Neighbor

gene id symbol gene type direction distance location
AMCG00003046 NA coding downstream 96491 10318878 ~ 10323697 (-)
AMCG00003048 pgam1,pgam1b,pgam1a,LOC107548630,LOC107700858,LOC107598490,LOC107668811,LOC107673951 coding downstream 120028 10293726 ~ 10300160 (-)
AMCG00003047 exosc1,LOC107598491,LOC107700859 coding downstream 127850 10288264 ~ 10292338 (-)
AMCG00003042 NA coding downstream 134162 10275706 ~ 10286026 (-)
AMCG00003038 ubtd1,ubtd1b,LOC106589356,LOC106578996 coding downstream 158029 10247857 ~ 10262159 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding upstream 52998 10498202 ~ 10511429 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding upstream 72663 10517867 ~ 10519484 (-)
AMCG00003055 NA coding upstream 118049 10563253 ~ 10570538 (-)
AMCG00003063 NA coding upstream 129428 10574632 ~ 10578103 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding upstream 136189 10581393 ~ 10600651 (-)
G140368 NA non-coding downstream 80928 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 382331 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 530562 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 566775 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 648681 9765653 ~ 9771507 (-)
G140456 NA non-coding upstream 177402 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 208121 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 373565 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 480914 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 520328 10965532 ~ 10967602 (-)
AMCG00003049 NA other downstream 88816 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 812872 9596943 ~ 9607316 (-)
G140015 NA other downstream 1182458 9236658 ~ 9237730 (-)
G140006 NA other downstream 1572348 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 1925592 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1163259 11608463 ~ 11622649 (-)
G140758 NA other upstream 1195612 11640816 ~ 11647619 (-)
G140757 NA other upstream 1248802 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2283034 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2405817 12851021 ~ 12855341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location