AMCG00003055



Basic Information


Item Value
gene id AMCG00003055
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10563253 ~ 10570538 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00003055
AGCCAGGCGCGTCACCCTCACACCCCGGCACTGAAACAGGAGCTGCCAGGACGGCTCGGCCCTGAGATACAGCAGATTCCCCCGCTGGGACTGGCTACCATAGAAGGCATGCGGATCTTGGGGAGCCTCCCGGCCCCCCTGTACCCGTACCCCTGGTGCTGCTCCTCCAGTCACCGGCCACTGCTGCTGGAtgtggagctgctgctggagctggagccgCTGGATCCCCGGTCCTCGAAGATGGATATCTCAATCTGAGAATTGGGTGTCAAGGACAATCAACCCTCACACTGGTCTTCCCATCTGTCAACACACCGTCCATCAGCCATCACTGACACAGTCTGGAGCAGCTCCAAGAAGGCATGGCTGCCTTTCCACCTACCCTCAcacagattaattattttactatcTGAAGCTATTCAAAGCTCTGATCTCTGAAAATCTAATCTCTTCAAAGTAACCCATACTGTAAGCCTGGCCTCAAGGATGAGGGATGAGATGACGATGAAATTGAAAGGCAAACATTAATGGAGCACATATTTTTGATTGGGTACAATGGTCTGGTATTAGAAATACCACCCAAACACTAAAGAGGTAAGAGAATAACTGTTCCAAGTGGTCAATAAAggaatataacattttaaagggGTTATGAAAGATGCATTTGTAGATTTGTTTGGGTGAGCAGTAGTGCTGTAAGGAAATGCGTAGACCACATATTTgcacaagttttttttcttattatgcCTAGCAGCAGTTTTGTTACACTTTATAGTCCAGGGATGATTGATAGCATTTCACCAAGTTTTACTTTAGGGGAAAATATTTTAGTAGGCTAAAACTTGCATTGCTGAGCTGAGAAATCCACAAacggagaagaaaaaaagacatcgaaatgagaaaaacatttagCTGGGGATGAATCGCCATGAGAGCATGCTCTCTGGAAACCTTTCATCTGAGATGCTACAAAAGGAACAGCTCATTTTAACATCGAACCCCATCGTTCATAGACATGGTTAACCACAGCAAAGCAGCCTGCCATTTGAAACCTTTCAAGTTTGCGGAGGGCTGGCATGTCAGGGACTCATCTGCAGCGTGGGACCACTTAGCACTGTGTGCAGAATCATGCAGTGTGAGGTGTGGTGCTGCAGGGCAGGGGATTCGGTTTCTTCAGGACTTGACAGGGCAACAGAGTCTGCATGATGTCACCCTTTCTGAAGGGGCCAGGGACAGTTATTTATTGGATTATTCTGAAAAGCACTGAGACAGCTGATAAGTATCTCGAGCCATCTCTGgtaatttcttgttttgtgttgtgtgtagtCATATAAGCTGAGGTGAATTTGGAATGCcttctgattaaataaaagcttAAGTAGTCGCAGTGCCCTGTTCTCCCAAAAGGAGGTGCTGACACCAACATCATCGTGATTGATGGACAGGTGCAATTGCAGATTTACCACTGTGATAAGTGACAACATCCTCTCTGGGTGAACTGTTGCATAGAAACAACTcttggaaaaaacacatttttccttAAGTCATAAACCAAAACACGTGACAGTCCTGCTAGGGCTGTGTGAT

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00003055 True 1587 mRNA 0.46 2 10563253 10570538
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding downstream 43769 10517867 ~ 10519484 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding downstream 51824 10498202 ~ 10511429 (-)
AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding downstream 118049 10420188 ~ 10445204 (-)
AMCG00003046 NA coding downstream 239556 10318878 ~ 10323697 (-)
AMCG00003048 pgam1,pgam1b,pgam1a,LOC107548630,LOC107700858,LOC107598490,LOC107668811,LOC107673951 coding downstream 263093 10293726 ~ 10300160 (-)
AMCG00003063 NA coding upstream 4094 10574632 ~ 10578103 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding upstream 10855 10581393 ~ 10600651 (-)
AMCG00003059 NA coding upstream 54422 10624960 ~ 10647910 (-)
AMCG00003062 NA coding upstream 86523 10657061 ~ 10662103 (-)
AMCG00003061 NA coding upstream 99967 10670505 ~ 10679832 (-)
G140368 NA non-coding downstream 223993 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 525396 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 673627 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 709840 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 791746 9765653 ~ 9771507 (-)
G140456 NA non-coding upstream 52068 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 82787 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 248231 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 355580 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 394994 10965532 ~ 10967602 (-)
AMCG00003049 NA other downstream 231881 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 955937 9596943 ~ 9607316 (-)
G140015 NA other downstream 1325523 9236658 ~ 9237730 (-)
G140006 NA other downstream 1715413 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2068657 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1037925 11608463 ~ 11622649 (-)
G140758 NA other upstream 1070278 11640816 ~ 11647619 (-)
G140757 NA other upstream 1123468 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2157700 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2280483 12851021 ~ 12855341 (-)

Expression


AMCG00003055 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

AMCG00003055 Expression in each Bioproject

Bar chart with 5 bars.
AMCG00003055 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 14.
End of interactive chart.

Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location