AMCG00003056 (LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040)


Basic Information

Item Value
gene id AMCG00003056
gene name LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10498202 ~ 10511429 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003056
ATGGATGGGAGGATGAGGTTGAGCTGGGGATTAACCTCTGTTAGTGCCGCCCTCTCACCCCTGTCCTCATATGGCTGTGAGGAGCATAGCAATGAGCCCCAAATTCACCTCCAAGCTAACTATGAGGTTTCATTTCAGGGAGAGCCAGTAGGGGGCACACTCATACAAGAAAGACTGTGCAGGGCCTCCAAGGTCTGTCCTCCGTGTGACAATGAGCTGAAGGCCGACACAATAATGGAGCATTTCTGTGCCAGTGATTTTGTTTGTGAGAAGCATGTCAGAGTTGCAATGCTCTGTATTGGGGAGCAGGGCAAGCGACCCACAGTCCTCTCGTTGCTGGGCCTGAAGGTCCTATGGATAGCAACCTCACTGGCTTCAGCTGAACTGCATACACTTACCTTTCATGTCAAGTCATCCCTGACAGACCatcataaaactgaaatgaaattaaatgaaaatgtcataaaGAAGTGCACGCGTCCTCGCAAACTGCTGGGCCAAGTCGGGCGTCTCAGGACAACAGGAACAAAAGAACAGGACGATGACATCATGGCGCTGAAGATGAAGATCAAGGAGGTGAAGAAGGAGAAGGGGGACCGGAAGCTGATCGCCgcgcagaagaagaagaaggttCTAAAGTTGGGCGTCCTGCGCAAGAAGGACCTGAAGAAGCTGGTTCTGTACATCAAGAATGGAGCCAACTGCCCCTGCACGCAACTGGACAACCTGGGCAGCAATTTCCTCATCATGGGCCGCAAGGTGGACCAGCAGCTGCTTCTCATGTCCATCCACAAGTGGGACAAGAAGAGCAAGGAACTCAAATTTGCCATCAAGTACATGAAGTCCCACCAGTGTCCCACCTACCACACCGTGTTCCAGTGA

Function

NR:

description
PREDICTED: secreted frizzled-related protein 1-like

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003056 True 882 mRNA 0.51 7 10498202 10511429

Neighbor

gene id symbol gene type direction distance location
AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding downstream 52998 10420188 ~ 10445204 (-)
AMCG00003046 NA coding downstream 174505 10318878 ~ 10323697 (-)
AMCG00003048 pgam1,pgam1b,pgam1a,LOC107548630,LOC107700858,LOC107598490,LOC107668811,LOC107673951 coding downstream 198042 10293726 ~ 10300160 (-)
AMCG00003047 exosc1,LOC107598491,LOC107700859 coding downstream 205864 10288264 ~ 10292338 (-)
AMCG00003042 NA coding downstream 212176 10275706 ~ 10286026 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding upstream 6438 10517867 ~ 10519484 (-)
AMCG00003055 NA coding upstream 51824 10563253 ~ 10570538 (-)
AMCG00003063 NA coding upstream 63203 10574632 ~ 10578103 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding upstream 69964 10581393 ~ 10600651 (-)
AMCG00003059 NA coding upstream 113531 10624960 ~ 10647910 (-)
G140368 NA non-coding downstream 158942 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 460345 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 608576 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 644789 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 726695 9765653 ~ 9771507 (-)
G140456 NA non-coding upstream 111177 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 141896 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 307340 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 414689 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 454103 10965532 ~ 10967602 (-)
AMCG00003049 NA other downstream 166830 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 890886 9596943 ~ 9607316 (-)
G140015 NA other downstream 1260472 9236658 ~ 9237730 (-)
G140006 NA other downstream 1650362 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2003606 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1097034 11608463 ~ 11622649 (-)
G140758 NA other upstream 1129387 11640816 ~ 11647619 (-)
G140757 NA other upstream 1182577 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2216809 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2339592 12851021 ~ 12855341 (-)

Expression


Co-expression Network