AMCG00003059


Basic Information

Item Value
gene id AMCG00003059
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10624960 ~ 10647910 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003059
GCTGTGTTTGGCTCCAGCACACACAGGCCAGCCATCATGATATTGGGGTTCCTGCTGTCTGTGAGCCCCCTGCTGTTCCTCGTGGTCCAGGGAAGCCCCGAGTCTGGCCAGGCCCGCTCCCGCCGCGCCCCTGCCGTCAAACTGCGCCTGGCCGGGGACCCCCGCCTGCCCAACGAGGGCCGCCTGGAGATCTTCTACAACCGTACCTGGGGAACAGTCTGTGATGATGATGTCGACCTCAACTTGGCCAATGTGGCCTGCCGAGAGCTGGGCTTCCAGGGGGGTGTGTCCTGGGCACACAGCGCCCACTACGGAGAGGGGGACGGCCCCATCTGGATGGACAACGTCCACTGCGACGGCACCGAGAGGTCCTTGGGCGATTGCCGCTCTAATGGCTGGGGTGTCAGTGACTGCCAGCACTCGGAAGACCTAGGCGTGATCTGCACGGAGCAGCGGACACACATGTTCGCTCAGCCCCGGCAGCCAGAGCGACCCACCAACCTCATCAACCAGgTTGCCAACAAAGTGAAGATAGACGAAGTCCGTCTGCGTCCCATTCTTACCAACACCAAGGGTCGTGCCCCCATCACCGAGGGAGTGGTGGAAGTGAAGCATGCTGGGAGGTGGCGGCAGGTGTGTGACCTGGGCTGGAACCTCAACAACAGCCGGGTGGTGTGCGGCATGCTGGGATTCCCCTCAGCGGTGAAGCATAATGTCAAGATGTACAAAAAGTTGTGGGACACGAAGGTGAAGAATCCCTCCAGCAGGCTGAGCACCATGACCCGGAAGAAGAGTTACTGGGTTGAGAAGGTGAACTGCCAGGGCTACGAGCCCAGTCTGTCTCAGTGCCGCGTGCAGCTGTCCATCCCTCGCAGCGTGGTGCCCTGTAGGAACGGCATGCATGCTGTGGCCCGCTGTGTGCCAGGGGCCCAGTTCGTCAGCAGCACTGCCAGGCGGCCACCCACGCAGCACAGTGCTGAGCCTGCTGTACGGTTGAAGGCGGGTGCTCGGCTCGGTGAGGGGCGCGTGGAGGTCCTGCGCGAGGGGAAGTGGGGCACAGTGTGCGATCATCGCTGGGACCTGGTGTCTGCAAGTGTAGTGTGCAGAGAGCTGGGGTTTGGCACTGCAAAGGAAGCCATTCCAGGAGCATATCTGGGTCAAGGAATCGGCCCAATACACATGAATACAGTTCAATGCACCGGCTCTGAGCGATCCATCACTGAGTGTTACTTCCAGGACATCGCCACCAGGGGGTGCACTCACCACGACGACGCCTCTGTGCGCTGCAACATGCCGGACTTGGGCTTGGACAGCACGGTGCGTCTGGCCGGAGGACAAGCTCCAGGGGAGGGCCGTGTGGAGGTGCTGATGGAAATGGGGGGCCGGAAGCGCTGGGGGACAATTTGCAGTGAGAACTGGGGCATTAATGAGGCCATGGTGGTGTGTCGCCAGCTGGGGCTGGGCTTCGCCTCTCACGCTGTACAGGACACTTGGTACTGGCCAGGAGACCCGGGGGCCAATGATGTGGTTTTGAGCGGGACCCACTGCTCGGGCTCGGAGATGTCCATACAGCAGTGTCGTAGGAATGGCCAGATCCACTGTCCCCGGGGCGGTGGGCGGCGCGCGGCGGGGGTCACCTGTTCTGATGTGGCCCCAGACCTCTTGGTGAACGCCCAGCTGGTGCAGGAGACGGCGTACCTGGAGGACCGGCCGCTGCACCTGCTCACCTGCGCCCACGAGGAGAACTGCCTGTCCTCCTCCGCTGACCGCATGAACTGGCCCTACGGACATCGCCGCCTGTTGCGCTTCTCCTCGCGCATCCACAACCTGGGCCGGGCCGACTTCAGACCCCGCGCCACCCGCGAGTCCTGGATCTGGCACCAGTGCCATAGGCACTACCACAGTATCGAGGTGTTCACGCACTATGACCTCCTGACCCTGAATGGCACCAAAGTGGCAGAAGGTCACAAGGCCAGCTTCTGTCTGGAGGACACCTATTGCCCTGATGggCTGCAGAAACGCTATGCTTGTTACAACATGGGGGACCAGGGCATCACTGTGGGCTGCTGGGATACCTACCGTCATGACATTGACTGTCAGTGGGTGGACATCACCGACGTGAGGCCAGGGGAATACATCTTCCAGGTGGAAGTGAACCCTAGCCTGGATATGGCCGAATCTGATTTCACCAACAACGTGATGCGCTGCCGATGCAAATACGACGGAAACCGTATCTGGATGTATGGCTGTCACACAGGAGACGCCTACAGCTCGGAGATTGAGGACCTGTTTGAGCACACGCGCCAGATCTCCAGCAACTTCATCTAACCCATCATCACGGTAACGCTCTGCTAGTCCTCAGTGGCAGGGTCACGACTGGGTCATAAGAGCACTTACCTCAGTGCATTCAACATCAACGGGTCGCAGAATGGCATCTGTCCACTCCAGAAATGCCAGGAATAACACCTTTAACAGTGCAGTAAAGAACACTTCTGGAAAGGTCTTCTCTAATGTCCATTCTATTCTTCACACCGACGTGGACAGGTGTCAAACTGACAGCAGTTTTTGTAAACCTTAGTATTGCTTCCAAATTAATTCACACTTGGGTTCTATGGTCTTAAGATTTTCTAATTCAGTTTTTGTAATATACATAAAAGATCTCACACTGAAGAATGGACTTACCATAAAATATGCTAATACCAGATCAATTTCTTACTCTGTAATCAGGAAGACAATGATaaacttgtaaaataaaaaaattaccgGCATCGATCCCCACTATTGGAAACCTGGAAGGAACGGATCGGATCCCTGCAGTGCCAACCCCACTCCTGCTCGGCCGTCAGGGAGGGTAGCTTGGGGTGAAAGTTGCTGCTTTGTGCTCGGAGTCGAGTTCAGCCGGGATTTCGTGTCCTGATTCTCTGATCTGGATGTTGGTGCTTCATGTGTAAGAGTACTGTTTCTCCAAATTCACATccctttttgaaaaacaaagtttgttttgtataaaaacaatataatatttttatgtttaaagtttttttcaATGTTGCACATGTATCCTCATGTACagttttaagtatttacaaaaacaattaccaaTAGAACTGCCGATTATTTCTGTTCAAACCGATAATCTTGTCTCTCGCTCTGTTGGAATTTTTGCTGGAACAGGTCAAATGCTTTCAGTAAATGATGCACTTTATTCATAAAATTTCAGTATTCAGGCAGTTCTGTTTGTAAGAGTTATGTCTAAAATTAAGTTCAGATTGGTAGAGAAATAAACTTTGATTTTTCAAAACTGGGCAAGTGAATATTAttcttttagaaatatataaattattttttcgTATTCAATATGCTACATGCAGGTTTTTTATTGTTCAGTTTGTGACCTATTAGGCACTGCGGACCAAGCTTGAAAGGTCAAATCTGTTAAACAAGGTCAGATCAGGGAGAAGTTACAGTCTCTCTAGATGTTCATTCCAACTCTGTAAGTAAAGGTTTTGGTATGCAGTCAATCATAACTGTCAGTGTGCCAGCAGTATTATTTCTTAACCAACAGCAATGTGTACATTACAGCTGCGAATTACCCTTGTTCTCTTTGCTATGGGTTGAGGTATCCCAACTGGAAACACTCAGGCAACCATCTCAACAGTGAGCAGTTAGGTTTTCTTTTATAGATCTGAAAAAGAAGCTAAACATCAGCACTTTTCAGTAGATTTAAAAGTTGTTGCGGAAATGCACCAAGGGCCTGTCAGACAAATGAGGCAGTGCAATCAGACCTCATgcttatgtgtttttgttgggCAGTGAAATGAAATCCCTGTTTAAACAATCAtgctaaaatattaaatacatgtctATTAAAATTGCACAGACATGCTGTAAAAAGCCCAATTTCACAGCAACATGGAAACCAAATAAAATCCCTTTTATCACGTTTAAACAGGCTGCACATCTGGCCATGGTGGTTATTCAGCAGGCACAGGTTTTGTATGTGAGCCTGCAAACATCAACACAACAACTAATGTCCCACAAACATCGCATTGTATACCAATCTGGAGTTTAGATGTGGACAGTAGGGATACCACAAACTGGGATTTTCTGTTTCAAAAAGAACATATTtcacctaaaataaaaaatgtattatcttggTAATTTATAAATCTTCccgttttacttttttcccctccagttATATTTACATGTACTGTGCGTGAATggtcattaaaaaagaaaactttgttTAGCTGTCTCACATCAACTAAATGGAaaagttcatttttaatacCATAATGACACctgtacttaaaaataatgatagaaAGAACATGTAATGTGTAGCCAAGGGCTGTGGATTAAATTGGCCATTGACTGAGAATGGAAATTACTATGGCTTGGTCTATCTTTCATGTCTTTCAGTGAAGTGAAAAATAGTTCAGACAGGGAAAGCTGTGATTGTGTAGCCTTCCCGCTACATTGAAGACTGTAATCACATTCTTGCCAGACTTTCCccgaaataaagaaaaagaaaaataagcatATTATAACTTGATTAAATTGAAATCGAGTAGCTTGTCCAATCAATAATGCTGCAAATTCTCAAAAGATCCATAACCTGCATTTGTATTGTAGCCCCATACAAAATCAGAACATGCTGTTATTTAATAAATTGTGTTAACAGAAGTCCATTTCCGTGTCACTTTCTATTacagtgaaaattaaaaatctacTTAAATACactttgtgatttttgttttcatctatgGTATCCTccctgaattaaataaattcagtattactgaaacaaaataaaatctgtagtactaaaacaaagcagcacaaaaaaaGTTAGCCATCGATTCCTGGAGCTCTGCA

Function

GO: NA

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003059 True 4881 mRNA 0.48 14 10624960 10647910

Neighbor

gene id symbol gene type direction distance location
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding downstream 24309 10581393 ~ 10600651 (-)
AMCG00003063 NA coding downstream 46857 10574632 ~ 10578103 (-)
AMCG00003055 NA coding downstream 54422 10563253 ~ 10570538 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding downstream 105476 10517867 ~ 10519484 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding downstream 113531 10498202 ~ 10511429 (-)
AMCG00003062 NA coding upstream 9151 10657061 ~ 10662103 (-)
AMCG00003061 NA coding upstream 22595 10670505 ~ 10679832 (-)
AMCG00003067 NA coding upstream 46682 10694592 ~ 10700613 (-)
AMCG00003068 NA coding upstream 83032 10730942 ~ 10743690 (-)
AMCG00003069 nkx23,LOC106591187 coding upstream 108231 10756141 ~ 10758646 (-)
G140456 NA non-coding downstream 1218 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 285700 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 587103 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 735334 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 771547 9848895 ~ 9853413 (-)
G140458 NA non-coding upstream 5415 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 170859 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 278208 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 317622 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 363228 11011138 ~ 11037311 (-)
AMCG00003049 NA other downstream 293588 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1017644 9596943 ~ 9607316 (-)
G140015 NA other downstream 1387230 9236658 ~ 9237730 (-)
G140006 NA other downstream 1777120 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2130364 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 960553 11608463 ~ 11622649 (-)
G140758 NA other upstream 992906 11640816 ~ 11647619 (-)
G140757 NA other upstream 1046096 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2080328 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2203111 12851021 ~ 12855341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004385 LOXL4 coding NC_007122.7 CM002895.2 44337157 ~ 44339220 (-)
grasscarp (Ctenopharyngodon idella) CI01000306_00245734_00262949 LOXL4 coding CI01000306 null 245141 ~ 263251 (+)