AMCG00003060 (crtac1,LOC107832886,LOC106964415)


Basic Information

Item Value
gene id AMCG00003060
gene name crtac1,LOC107832886,LOC106964415
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10581393 ~ 10600651 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003060
ATGGCTCTTTGGCCCTTGCTACTCCTGCTGGACCTGCCTGGCCTGTCCTGTAGCCAGCGCTCAGAGCCCATGTTTATGGCAGTCACCAAGACTGTGCTGCCCCCGGACTATGACAACAACCCCACGCAACTCAATTACGGAATGGCTGTGACTGATGTGGACGGGGACGGGGACctggaggtggtggtggtaggCGGTGACAATCGGGCAGGTCCGTCAGAAACAGTTTCCTGGGGGATGGAGGCTGAAAGGCTGAGCCTGGACCGCAGCCCCACAGTCACTGTCCTCGGGGCCCCCTCCTGGCAGGCAGCAGGGCCAGGACAGCGGAACGGCCGCATGCCAGAAAGGAGGATGTACAATGGTCCAAACCTTGTTCTGAAGTATGACCGAAGCAAGAAGGTTCTCTATAACATTGCTGTGGACGACCGGGATTCCCCCTTTTATGCCCTACGCGACCGCCAAGGCAACGCCATCGGAACTCTGTTTTTTCCCATGCAAGGTTTGGCAACATACTCTGACAAGCTTTTCAAGTTCCGCAACGGCCGCTTTGAGGATCTACTGAGTGATGACATCAACGTGCGCAGAGACGTGGCAAATCGCATGGCTGGGCGCTCAGTTGCCTGTGTGGACAGAAAGGGAACTGGACGGTACTCCATTTACATTGCCAACTATGCCAGTGGGAATGTGGGCTCCCACTCTCTGATTGAGATGGATGAAACTGCTAGTGACCTCACTACAGGGGTCATCGCTCTGTCAGATGTGGCTAGTGAAGCCGGAGTCAACAAGTTCACAGGGGGGCGTGGTGTAGTGGTGGGACCAATCGTCAGCAAGACGCGGTCAGACATCTTCTGTGACAACGAGTATGGGGCCAACTTCCTGTTCAAGAACAATGGGGATGGGACCTTCACGGACGTGGCAGCCCAGGCAGGTGTTGAGGACTCCTCGCAGCACGGACGGGGAGTCGCTCTGGCTGATTTCAATCGGGACGGGAAGACAGATATAGTGTACGGCAACTGGAATGGCCCACACCGCCTCTTCCTGCAGACCAACACCAATCGGAAGCAGAGATTCAAGgaCATTGCCACCCAGAAATTTGCCATGCCCTCTCCAGTTCGCACGGTCATTGTGGCCGACTTTGACAATGACAATGAGCTTGAGGTCTTCTTCAACAACATTGCCTACCGAGGGCCTTCGGCCAACAGGGTCTTCAGGGTCTCTCGGAGGGAGCACGCTGACCCCCTTATTGAGGAGGTCAACGTAGGAGACGCAGCAGAACCCGAGGGCCGCGGGACGGGGGCTGTAGTGACTGATTTTGATGGGGATGGGCGCCTGGACCTGCTGGTGTCCCATGGGGAGAGTGCAGCTCAGCCCCTCTCTGTCTTTAAAGTCAACCCGGGCTCTAACAATAACTGGCTGCGTGTGATCCCTCGCACGCAGTTTGGAGCCTTTGCACGGGGAGCCAAGGTAGTGGCATATACGAGAAGGAGTGGCCCGCACACGCGTATCATCGATGGGGGCTCGGGGTACCTGTGTGAGATGGAGCCCGTCGCCCACTTTGGAGTCGGGAAGGATGTGGTGACCAGAGTGGAAGTGTATTGGCCGGATGGGCACTCAGTGGCACGCCCCCTAGAGGCAGGTGAAATGAATTCTTTACTGGAGATCTCCTACCCAAAGGCTGAGGTGGAAGGGACACAGCCCACAGAGATTGAGTGTGGAAACGGATTTATTGCCAATGAAAACGGTCGCTGTACAGACAAAGATGAATGCACCCAGTTCCCCTCTGTGTGCCCCCGCGATCGCCCGGTCTGCATCAACACCTACGGAGCCTTCAAGTGCCGCTCCAACAAGAGGTGTGGCCAGGGGTTTGAGCCCAGTGAGGATGGTACCGCCTGTGTGGCTCAAATCGCTTACTTTGGGGGGAATCATGCTTCCTCCTCTTCCAGGCTCTCTGCCCAGCTCTCCCAGTTCTCTCTTGCTCTGTTGGGGTTCGCAGTCTGGCTCCAGGCCTGA

Function

symbol description
crtac1 Predicted to enable calcium ion binding activity. Predicted to be involved in axonal fasciculation. Predicted to act upstream of or within negative regulation of receptor binding activity and olfactory bulb development. Located in extracellular exosome.

NR:

description
PREDICTED: cartilage acidic protein 1 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003060 True 2010 mRNA 0.57 15 10581393 10600651

Neighbor

gene id symbol gene type direction distance location
AMCG00003063 NA coding downstream 3290 10574632 ~ 10578103 (-)
AMCG00003055 NA coding downstream 10855 10563253 ~ 10570538 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding downstream 61909 10517867 ~ 10519484 (-)
AMCG00003056 LOC107702728,LOC107665568,LOC107747303,LOC107564685,LOC107728441,LOC107601040 coding downstream 69964 10498202 ~ 10511429 (-)
AMCG00003052 zgc:171482,zmat4,LOC107747266,LOC107564682,LOC108443470,LOC107702738,LOC108262817,LOC107728442,LOC107665614 coding downstream 136189 10420188 ~ 10445204 (-)
AMCG00003059 NA coding upstream 24309 10624960 ~ 10647910 (-)
AMCG00003062 NA coding upstream 56410 10657061 ~ 10662103 (-)
AMCG00003061 NA coding upstream 69854 10670505 ~ 10679832 (-)
AMCG00003067 NA coding upstream 93941 10694592 ~ 10700613 (-)
AMCG00003068 NA coding upstream 130291 10730942 ~ 10743690 (-)
G140368 NA non-coding downstream 242133 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 543536 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 691767 9889158 ~ 9889626 (-)
G140217 NA non-coding downstream 727980 9848895 ~ 9853413 (-)
G140199 NA non-coding downstream 809886 9765653 ~ 9771507 (-)
G140456 NA non-coding upstream 21955 10622606 ~ 10623742 (-)
G140458 NA non-coding upstream 52674 10653325 ~ 10656997 (-)
G140521 NA non-coding upstream 218118 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 325467 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 364881 10965532 ~ 10967602 (-)
AMCG00003049 NA other downstream 250021 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 974077 9596943 ~ 9607316 (-)
G140015 NA other downstream 1343663 9236658 ~ 9237730 (-)
G140006 NA other downstream 1733553 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2086797 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 1007812 11608463 ~ 11622649 (-)
G140758 NA other upstream 1040165 11640816 ~ 11647619 (-)
G140757 NA other upstream 1093355 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2127587 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2250370 12851021 ~ 12855341 (-)

Expression


Co-expression Network