AMCG00003061


Basic Information

Item Value
gene id AMCG00003061
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10670505 ~ 10679832 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003061
GGAGACTAGCAGAGGCAGAGGGGAGgacggagagactgaggactATGTTGATCTGGGAAAGGAGCTGTTATGGCTGCAGGGTGGTGGGGCCGCACAAGGAAAGCAGCCCTTTGCTGTGGGACACTCACAAGGGGATGGCACACAGCAGTGCCCAAGACAAAGTATGACGCTGTGGTGATTGGAGGAGgACATAATGGACTGGTAGCTGCTGCCTATCTGCAGAAAGGGGGTGTGAAGACGGCGGTGCTGGAGCGCAGGCATGTGATTGGTGGAGCTGCCGTAACTGAGGAGATTGTTCCAGGATTTCGCTTCTCCAGGGCCTCCTACCTGCTCAGCCTGCTCAGACCTCACATCTACAAGGACTTGGAGCTGAAGAAGCACGGCCTGAAGGTGTATCTACGGGACCCACATGCTTTCACCCCCCTGCTGGAAGAGGGAGTTGGGGGGCGACCCCCGCGGTCACTGCTGCTGGGTGGAGACATGTCAGAGAACCTCAGACAGATCAGCGTGTTCTCTGAAAGGGACGCTAAGGCCTACCCTGCCTATCAAGCCTACATGGAGAAGCTGGCCAGTGCCATTGATCCTCTGTTGGACGCCCCCCCAGTCAACATCCCTGGGATGACTCAAGGGTCACTGAGGAAGAGACTAGCAGCCCTTTGGACGCTGAGACCACTGCTGCAGACTGGTTTAAAACTTGGTAAGAATATTCCGGATTTCTATGAACTTCTCACAGCACCGATAACAAAAATCCTTAATCGGTGGTTTGAGTCGGAGCCCCTGAAAGCCACTCTGGCCACAGATGCGGTCATTGGTGCCATGACGAGCCCCGATGCCCCTGGCAGCGGGTGAGAGTTATCCTTCCTGTCAGCTGGCACTGCAGCTCTGTGGTGCTGGTGGCTTTAATTGCATTCAGTCATGAGTTAACTGACCATGTCTTTTCAGTTTAGTCTGAGATATTGTAAGAGTTGCTACTCATCTGCAGTTAGCTGCAGTAATCTATGTCAAACAGTGTGGTTTTACCTGAATATTAAGCTTCTTTAACGGTCATGCTGAAGTGATTATATCTGTGTatgtccgtgtgtccctgcaggtACGTGCTCCTGCACCACGTGATgggagaggtggagggggagagaggcgCCTGGGGGTATGCCGAGGGGGGGATGGGTGGCGTCTCACAGGCCATTGCCAACTCTGCCCAGGCCCATGGAGCCTCCATCTTCACTGAGCAGGCTGTAGAGCGGGTTTTGATTGGTAAGGATGGGTCCGCTAAGGGAGTTGTCCTGAAAGGCGGCATAGAGATCCACAGTAAAGTAGTTCTGTCCAACGCCACCCCACACGTCACCTTCAGAGACCTCACCCCACAGGACTCTCTACCTCCAGATTTTATTAAAGCTGTCTCTCAGATTGACTATGCCTCTCCCGTCACCAAGATAAATGTTGCTGTGAACAGGCTCCCCAGTTTCCTAGCTGCCCCCAATTCTCCAGATGGGAGACCAGGCCCACACCACCAGTGCTCCATCCACCTGAACTGTGAGAGTACTGAGGTGTTAGAGCAGGCTTACCAGCAAGCCACACAGGGACATCCTTCTACCAGACCCATGCTGGAGGTTTGTATCCCCTCAGTACTGGATCCCACTCTGGCGCCCCCTGGCTGCCATGTGGTGTCCATTTTCAGTCAGTTCACCCCCTATTGGCTGGAGGGAGGCCGGGCCTGGGGGGAAGAGGACCGTGAGAGATATGCTGACTCAGTGTTTGGATGGATTGAGCGCTATGCCCCTGGATTCAAGAGCTCTGTCGTGGGCAAAGAGGTGCTGACACCCCCTGACCTGGAGAGGATATTTGGGCTGACAGGAGggaaTATTTTTCATGGAGCAATGTCATTGGACCAGCTCTACCTAGCAAGACCTTTGCCCGCCTTCTCTAACTATCGTTCACCAATCAAAGGGCTGTATCTGTGCGGGAGTGGAGCCCACCCAGGTGGAGGTGTGATGGGCTCAGCAGGGTGGAATGCAGCCCTGGCTGTTCTTGATGACCTGCAGAGAGGCTGATATGAAGGCTGGGTGGGGGTGGGCACTGGACATGGCCTTGCAATCACACAGCACCCCGACTGGATCCTCCCTCTGCTGAGCAAAACATATAAAGTCCATAGGTTCTTCATTCAGTGTTTGGGACCAGCCCCAGGGCTCCATAACTCAAACAAGCAAGAGACTTCATTAAAGATCATTTACTTCAGCCAATGGACATTTGCTCTTGGTGGAACTgaaaactaaaattatatatcaaataatgaatatgtGACAAACTGATAAGCAGCTATTACTTCGGTGTTAACAAGCAGttgtgaaataaagaaagaataaaagcTCACATTATCAGTCAGTACACTCTACACATATAGGTTTGTTAACCTTGAGATGGAGGGTCAATGCCTTGCACAGTGTGTGTTAAAGGGCATCAACATGGCAACCAAAAACAGGCAAGAGGAACAGTATGGTGGGCCCcgggaagaaaaaataaaaatctataaaacagTACTTCTTTCTTACACACTTCAATGGTTTATACAATGTCTCACATTTATGTAACTGTTACAGTAtagataaaatacattaaaaaccgTTTTCTCTCATACTGAGCTTACTGTGACTGAATAATTCATTTATTAACATGGTCACGATCATAAACACTCCACAGAACACGGACTTCTGATGCcaatgagagaaaataaacgAGAGCATCAGCGGCTGCAGATGAGGCGCTGGGCAACCCAAGTCATCACACAGCCCGTGGTGCGCAAGGTACAACAATAAAAACGAGAAAAGCGCTTTCACAAGATTATTCGTTCAACAGCTCATGCATTATAATATAGGACTTCCGTCCGTTAGCCTTCCTGCACTTCAGGGTCGCAAATAAGAAAAAACCCACCGTGTGGTCGTATACAGTGCTTGTTTGTCTACCCCTCCGTGGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003061 True 2971 mRNA 0.51 15 10670505 10679832

Neighbor

gene id symbol gene type direction distance location
AMCG00003062 NA coding downstream 8402 10657061 ~ 10662103 (-)
AMCG00003059 NA coding downstream 22595 10624960 ~ 10647910 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding downstream 69854 10581393 ~ 10600651 (-)
AMCG00003063 NA coding downstream 92402 10574632 ~ 10578103 (-)
AMCG00003055 NA coding downstream 99967 10563253 ~ 10570538 (-)
AMCG00003067 NA coding upstream 14760 10694592 ~ 10700613 (-)
AMCG00003068 NA coding upstream 51110 10730942 ~ 10743690 (-)
AMCG00003069 nkx23,LOC106591187 coding upstream 76309 10756141 ~ 10758646 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding upstream 114222 10794054 ~ 10807733 (-)
AMCG00003080 NA coding upstream 228160 10907992 ~ 10912581 (-)
G140458 NA non-coding downstream 13508 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 46763 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 331245 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 632648 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 780879 9889158 ~ 9889626 (-)
G140521 NA non-coding upstream 138937 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 246286 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 285700 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 331306 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 427564 11107396 ~ 11107604 (-)
AMCG00003049 NA other downstream 339133 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1063189 9596943 ~ 9607316 (-)
G140015 NA other downstream 1432775 9236658 ~ 9237730 (-)
G140006 NA other downstream 1822665 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2175909 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 928631 11608463 ~ 11622649 (-)
G140758 NA other upstream 960984 11640816 ~ 11647619 (-)
G140757 NA other upstream 1014174 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2048406 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2171189 12851021 ~ 12855341 (-)

Expression


Co-expression Network