AMCG00003062


Basic Information

Item Value
gene id AMCG00003062
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10657061 ~ 10662103 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003062
ATGAGTAATCTTGTATCTGTGTCCCCAGAGGGCCCCAGTGAGAGGAGGGAAGACATGCTGGACTATGAAGGACGGGGTccagagaggaggacagaaaaTGGGACCCTAATACAGGATGGCTTGGAGGAAGGACTGAGCGAGGAGGAGAGAACCAGGCGGAAAGCAGAGCGGCGCAAAGCCAAGAGGAAGCGGCAAAGAGAGCGGAAGAAGCTGGAGAAAGTGAAAAAGAATGAGGGCAATGAACAGGCTGAGACTGAGGGGGACGCAGAGGAGTCGGAGGTGAGCGACAGCGAGGAGGAAACCGTGGAAGTGGGGGAGCTGGTCTCTCCTGGCGAGAGCAGGCCTGTCACCCTGCTGGCCACCTCAGGAAATGGCAACAACCGCCAGCCCCCTCCCAGCATGTGTGAGGAGgagCCCGAGTGGGATGTGAGCAGTGCCTTCGTTGCCAATGCTGCCAGTCACATTAGACCAAAGCCCAGCCGTAGATCCAAAGAGAACAAGGAGAATGATGCCAGAACCAGAGAGGTGAACGGCACAGGTGCTGTGATCAAGAAAAGCACCGCATTAGcagAAAAAGGGATCCAGCTGGTGCAGGAGGGACTGTATTTTCAGGCTGTCGAGATGTTTACAGAAGCGATCAAATACGATCCTAAGGATTACAGGTTCTTCGGGAACCGCTCGTACTGTCACGAGTGTCTGGAGCAGTACCCCTCTGCCCTCGCCGACGCGGAAAGGTCGATCCACCTGGCGGCCGACTGGCCCAAGGGCTATTTCCGCAAAGGGAGAGCCCTGATGGGGATGAAGAGGTATGGCGAGGCAGAGAAAGCGCTGGAGGAGGTACTGAAGCTGGACCAGGACTGTAAGGATGCCGTCACAGAGCTGCTCACCTGCCGAGTCCTGCAGCTCATGgAGCTGGGCTTCACCGAGCAGCAGAGCGTGCAGCTCCTGGACAAGTTCAGCACAGTTCAAGCTGTTCTGGCTGCCAAAGATAAGAACAGTACAGAGCTCAGTTACAGTACAGTGGTGGGTGATTTAGACTCTCTACTGGACATCTCTGGGACCCCCTGTGCCTCGCTGTGGGTGGGGAATGTCACCACTGAACTGAAGGAGAAGCAGCTGAGAGACCTCTTCAAAAGTTTTGGGGAGATCGACAGCATTCGAGTCCTTCACGAGCGATTCTGCGCCTTCGTGAACTTCAAGACCGCTGCAATGGCGGCGCGCGCAATGGACCAACTGCAGGGAGTGGAGGTTGAGAACACCAGGCTGGTGATCCGCTATCCAGATCGCCGCCCCCAGCGCACCCCACCCTCCCCTCAGAGGACGGCCACCTCCATCCCTCCAGCCCCCCCGCAGCCTGCCGCACCCACAGGCCCCAGACGCAGAGGACCGGTGAACGGAGACGAGTGTTACTTTTGGAGAACGTCTGGCTGTCACTTTGGGGACAAGTGTCGCTACAAACACATTCCTGGGCAGCGCGGCCGGGATCGGCGGCCCTGGCAGCCCTGAGAGTCGGCCCTCTGCCTCGCGGTCGCCTCCGGGGACTTGGGCATAAG

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003062 True 1553 mRNA 0.58 15 10657061 10662103

Neighbor

gene id symbol gene type direction distance location
AMCG00003059 NA coding downstream 9151 10624960 ~ 10647910 (-)
AMCG00003060 crtac1,LOC107832886,LOC106964415 coding downstream 56410 10581393 ~ 10600651 (-)
AMCG00003063 NA coding downstream 78958 10574632 ~ 10578103 (-)
AMCG00003055 NA coding downstream 86523 10563253 ~ 10570538 (-)
AMCG00003054 sfrp5,LOC107747303,LOC107564685,LOC107665568,LOC107728441,LOC107601040 coding downstream 137577 10517867 ~ 10519484 (-)
AMCG00003061 NA coding upstream 8402 10670505 ~ 10679832 (-)
AMCG00003067 NA coding upstream 32489 10694592 ~ 10700613 (-)
AMCG00003068 NA coding upstream 68839 10730942 ~ 10743690 (-)
AMCG00003069 nkx23,LOC106591187 coding upstream 94038 10756141 ~ 10758646 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding upstream 131951 10794054 ~ 10807733 (-)
G140458 NA non-coding downstream 64 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 33319 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 317801 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 619204 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 767435 9889158 ~ 9889626 (-)
G140521 NA non-coding upstream 156666 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 264015 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 303429 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 349035 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 445293 11107396 ~ 11107604 (-)
AMCG00003049 NA other downstream 325689 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1049745 9596943 ~ 9607316 (-)
G140015 NA other downstream 1419331 9236658 ~ 9237730 (-)
G140006 NA other downstream 1809221 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2162465 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 946360 11608463 ~ 11622649 (-)
G140758 NA other upstream 978713 11640816 ~ 11647619 (-)
G140757 NA other upstream 1031903 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 2066135 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2188918 12851021 ~ 12855341 (-)

Expression


Co-expression Network