AMCG00003065


Basic Information

Item Value
gene id AMCG00003065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10686270 ~ 10693974 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003065
CAGCTCAACACCAGCTGTTTCAAAACTAACTTCCTTCATACGggataaataatttgttttggttctgTATCGGATACATGtttatcttttcattatttgatcaaaacaaatgtattcatatatccAACTTTGAAGGCTTAAAGATTGCATGTTAAGTAGGTCGCCTCGGTGCAGTCGGGGGAGGCGATTCTGTCAAAGATTATGTACTAGTTTATTGAAGTTGCTGATGGCAACAGtcgtattaatattattaactgGGTGGTCGTGATacacactgggagcagcagaGCTTTAATCGGAGCCTTTGTGACAAGTGACGTGTGATGTGACAAGTGATGTGAGTGACTGTTCAGCCTCCCTGATCTGCAGACCTTACCGTACGGATGCCTCGGACCATTACAGTTAAACCCCTCAGTGTGTTTGACCAGTGACAACCTGGCACTGTCCACCTGGGTCAGATCTACAAGGGAGAAGGCTTCTGAACATCCTAGCCCCAGGCATGCCACAGGTACTAATGGGATGGAACCAGTGTTTGGTGAGGCATATGGGGGCCACAGATGCCTCTCAACATCCGATCAATTAGCAGCCTCTCCATCCTGTGGCAAGACTGAGAACGGACAGCTGGAGTGCCCTGAGAGTGTGGTCCTGATGCTGGGGTCCCCGGCAACACCCCGGAAACGGGCCTTTGAGCTGCTCAGTGACCTAGTAGATGATGGGTTCAGTGAGGAACTGCATCCAGAGCGCTGGGATGTCTCTGCACTGGATGACATCACCCGCTATGCCAAAGGAGTTCTGGAAGGCGAACTAGGAAATGTGGAGGGGATGTCGGGGGACAAGTGGATTAAtgcaagagaaagagagcagCCAGGGGCCTTGGGAGTGATGAATCTGCAGGGACAGAGCTGTCTTTCCCCCAGCCCTGCATGCAAAATCAGTTCAGCCAGGCAGGGGGCAGCGCTGAGTGAAATGCCAGAGACAGGAGCAGATCCCCAGCGCCAAGAGGCAGGAGACATCCAAACGGGAGGGGATGGGCAATTATCAGGGTCCACCTCGGAGCATTGCAGCGAGGAGCACAACTATTCCCTGCAAGCTGACCCGGACTCCGGCTCCAGCCAAGGGTCCGGAAGTGAGTCGGCTGACacggaggaagagggggaggaggaggaagaggagatggGAGAGCAAGGCGAATCCAGCTCATCCGCAATGGACTCTGACCTTGACCTTGACAACAACCCCGCTGAAAGGCCGCAGAAGCGCAAGTGTTTCTGGGAGTACAGCCATGGGCAAGAACCCGGGAGTAAGAAAGAGCGTAGCCAGCCCTCAAATACCTGGAGCTCCGGCACGCTGCCCAGCAACCTCTACCAGAGAGAGGGGGCCTCGGCTTCTGGGAGGAAGGGTCTACGGAAGGCCCGGAAGACAGACGCGAGCGATCTGACCCCCAACCCGCAGAAATTGTGCAGTATTGGAGAACAGTTACACAAACTGAACAGAGCCATTGAGGATATGAGGCCAGTCAACGACCTGCCTGTCACTGCCAGGGCCCTCTCCcggaaggagaaaaacaaactggcTTCCAGAGCTTGTCGTCTGAAGAAGAAAGCGCAGCATGAAGCTAACAAGATCAAGCTGTGGGGTCTCAATCAGGAGTATGAGGTCATAAGACAGAGAGTGGAGGACAGTGGAGCAGAGGATGAGATGGGAATGACGGAAAAGCTTGAGAATATACTGAAAGAATCCACTGGCCCACACGTAGCAGGACGGACCAAAGAGTTTGTTGAGCAGATGCTGGAGCACAGTGCAGCAGGACGACTGGCCAAGGTGCTGAATAAGGGCAGCTCGACCACCGCTTTTACTGTCTGATCCACTGTGCCACCCCCACCTCCGGTAATCTTTGCCAATCTGTCACTTTGCACTTTCTTATATGCGATGAGGTGAGGGTAGGGATTTTTTGGCATCTGTTGAAAACTCACATTAAGGTAGCATTCTCAAGTCcctttctgttgttttgcttttcatttactttaaaaaagaaaaagaaaaaaaaactttggtaGCATAATGTCTCTGTTCATTGCAGGCTAGCTGCTAGGTttcacatgtatgtatttttagttcCTGTACTTAATATGTTTTATCCCATTGTGCCTGAAAACAAACTCCTTGCAATGCTTATAGAACTTGTGGGCACAGATTGGTGGTTTGGTATGTTGTGCAACGGGAAGTAAACCagaacaggaaagaaaacagaccGGAAGCTTTTTGAGACCAGACCAAAATACCAATTTAAAGATAGATGAGTGTTATTTaagacatttcaaaaatgtatatcaaaacCTACAGGATAATCTTGTCAGAACTGCTGATTTAATGAGAGaaagatgtacattttaaagtgttttgttgtttgtgacTGTTTCAGGAAACTATGAACAATGGGCATAACtgaattactgaaaataattcTGTCAAGAGAACATATGTCCAAGCTTTCTTGATCTAATTTAAAGAATGGCATTAATGTTGGTGCCTTTGTTAAAACCTAGAAACAGACTAATTTCATTTCAGAGTGTATTTTCATATACTCTCaagctttgaaaatgtgaacCGACCCAGATAACTCTCTGGACTGAAAAATCCGAAAAAAAGGGCTGGAGTCAAAAAGATGcactaatttatatattttatatacaggaTCATGGTGTCTACTTACTGATTTTCAAACCAGCAGACTTCCTGGTCCAGTTACTCGCTGATCTCACAGACCAAGGACACTGTCTCTGgtgctttgaaaaataataatagttattaaaaTCATGGTAAGACCTTAGCCccttaaacattttattgagttaagaatacatcaaaaatataacatttaagaTGCACTTAAACTACGGTATATTTccttaaacttttaaaaatatttcatttaatcgAATATAGATTATTACCCACATCACAGACACAAGTGAATATATCTGCCAGTAAATAGTCTCTAGTTTCAGTAATTTActagtattgtatttttgttttagtacacaaacattttagtatataaaacattaGTGTTCTctgactgtttaaaaaaaacatttagaaaaggCAATATTGTTAAATGACACTTGAGAATGTAAACCAAAGAAAAAGATGTGAAAGATATCAAAGGtggaacaaaatgcattataactCCATTATACCAATCTCTGCAGTCACTCCTGTGTCCAGTAGTATCTACCTAAATATGGAGAAAATGTTTCATGCTATATTTTGTTCGTCTTTGTTTATGATCTCATGCCCTTTTGCATGACACCATCAGATGTAACCGTTCTGCCTTGAAATTAGTCTGATATACTAAGAGAATCTTtaaagcaaaaaactaaaatctgttGATGCGAGATTGTTGTTTGTATTATGGGGAAGATAATTGCACTTTACAAAAACAAGCCCTTGCTAATGTTGTTGCTTCGGGCAGGGATACAGTGCTCATAAACATACAGTCCCAATAAGCTCAATAactgtatttcatttcaaaatgttgcaCCAAATGGGAGGAAGAGGCAGCCAGGGGAAAACCCAAACCTCCCAACCTGTGATTTAAAGGCACTGCATTCCCAAGACTCTGCATATTAGCAAGACGGCTGCTGCCAGTGAATTGGAGATCATTCCGCACCATTCCGTACAAAATGCTAAATAAGGAGAAAGCTTaaaaggaagagggagggaagtagccgtgtctgtactgtatgtatgtatgtataaccGAAATCGCTCCATCAGGAGTCTTCATACTGTCAATCTGAAGTGCTTTAAATGGAACTGCAAATATCCGCAACACTCTGTGTCATGTATATCCAGTGTAATCCAACCCTGGAAACCATAACCATGCTTTGGTGTGGCAACAGGTAACACTTGTTTTAGATGCCCTTACGTTTCtggttaaaatgaaaaaaacgttaaaaaaaaaagtgcagttgAAATAGAAGcctgatattttattattgttctctGTGAGCGTACTGTATTCCcagtataatgtatattttaatatttataagcagctgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003065 True 4065 mRNA 0.43 9 10686270 10693974

Neighbor

gene id symbol gene type direction distance location
AMCG00003057 NA coding upstream 64122 10612506 ~ 10622148 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding upstream 120652 10543469 ~ 10565618 (+)
AMCG00003053 NA coding upstream 201428 10462276 ~ 10484842 (+)
AMCG00003050 NA coding upstream 360056 10325714 ~ 10326214 (+)
AMCG00003051 pi4k2a,LOC105896299 coding upstream 368471 10309072 ~ 10317799 (+)
AMCG00003064 slc25a28,LOC107601050 coding downstream 11659 10705633 ~ 10719938 (+)
AMCG00003070 got1,LOC105006879,LOC107601049,LOC107665595 coding downstream 87027 10781001 ~ 10787555 (+)
AMCG00003075 hpse2,LOC107747298,LOC107665577 coding downstream 124930 10818904 ~ 10824933 (+)
AMCG00003076 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107586094 coding downstream 166724 10860698 ~ 10862116 (+)
AMCG00003077 NA coding downstream 172665 10866639 ~ 10881830 (+)
G140436 NA non-coding upstream 29279 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 53781 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 58388 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 396335 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 434745 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 513532 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 551282 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 786831 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 794256 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 843673 11537647 ~ 11537954 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 2658 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 832817 9844776 ~ 9853453 (+)
G140189 NA other upstream 905818 9778250 ~ 9780452 (+)
G140030 NA other upstream 1355806 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 1369637 9300311 ~ 9316633 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 60927 10754901 ~ 10756840 (+)
G140613 NA other downstream 515599 11209573 ~ 11212111 (+)
G140693 NA other downstream 792217 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1678025 12371999 ~ 12678159 (+)
G140939 NA other downstream 2036757 12730731 ~ 12739767 (+)

Expression


Co-expression Network