AMCG00003066 (LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480)


Basic Information

Item Value
gene id AMCG00003066
gene name LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10680771 ~ 10683612 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003066
GGGGGCGGGGATTACAGTGAATCTACCTGGCAACAGCACCTGAAGGATCGGCAGAGAGCACCGAGCTGGGACTGCTTTGCTTTGCAGGCTCTTGTATTTCTCCGGCTGAAGATGGTGTCCCACTCCCTGACCCTGCCGATGATCTGCTTCACGACGCTGTGGGCGCTGGTGGGATGTGTCGCCCCTTGGTTCGTCCCGAAAGGACCCAACCGGGGCTGGCTTATAGCAATCCTGGCCCAGGCTAACCCTCTCTTCGGACCACAGCTGAAGAATGAAACCATCTGGTACCTGCGGTATTATTGGGAGTAAATTACTTGTGTGTGACCATGATCTTTGGGGGCCAACcctttccattccattccaagAGACACAGTTTTAATTTGGGCCTCTCCAAGGGCCTCAGTCACAGCAGCAGTGAGGAAGAGGAGCCCATCAAACACATTGCACCTTCACGATTCCTGCAAGCTCAAGCCCCGGGGCATCCCTTCCCTGGAGTCGGGGCTTCTCTACAGTCACAAATCCAAGCCAAAATAATAAGGATGCTGCTGTGATTTCTTTCTCTGTCCTTAAGGTGTAATAACCCAGGCTTTAGCATTTCTTTTCCTTGTATTACCATGAGGTATGTTCTGATTGAATGGGATAAATAATGAcgattaattatatttttaaaaaccatgaaaaattatgagaaatggaaatgtaaagcCTATGTTATCTGGCCTACTTCACATGACTTATTGTCTACTTTAGAAGTTTAATGTTGATAGACTCTGCTAGTAGTCAGTGAATTGGAAGTAAGTTTCTGTCAACTGTAACctatatattaatcatattaGTCCTAGTTCAATTATTGCAATGTGCAGAGGAAGAAGATTTCGTAATTTATATGCAATATTTTGTCAAAGATCCCAATTAAATTCTCCCTCATGCACTTAATTACAAATGTCCTCTTCCTCACAGCCCTTCAATCATATATCTGTATGTAACTGAACCtgacaaatgcatatttatatatttatttatttatttatttagttgtctgtatttctgtatttattttattgatctgTATTTTCAGGCCGGTGTCATGTAGTGATTGCATTAATGTGAAAGGTAAAACCTGCTCTGGTAATATTGTACTTAGGTTCTGAAATGTCTGATCCTTGATGGCTTTGGAAAGTAAGCTTTTTGCTGACTGTAGATTTTTACATTACTATCTAATCTTTAGTTACAAACTATCTTAGTTACTTAAAACTATTAAAGCTGTACATCCCTGTTTTTAAAGGTACTTTAATGATTCCTCTAGGTATTGGGGTTATATGCccatattattataaacattattattgttattttgtgtgtgattataattatgtaatagtgcaattatatacataaacaataatgaaaactttGAGAAGTGATCAGTGATTAAGACTTGCAAACCCTACCAAGAGGGTCTTTTATTGATACAGCATAATAGGAAAAGTAAGACCTGTATTTCTTATTCAGCTAAAAATCATTAAAGTTGATATGTTTAGTGGATAATTGTGTATATAAGttaaaacttgaaaaatgtaaCTCCAATTGCATTCCCGAGTTAAGATTCTTTGGTCAGCTTGCATCAGATTGTTCAAAACTGAAAGGGTATTATCTGATTAGTTGATGAATGGATAACGGTTGTGTCTTTATGGAAATGgtaaatctgaaataaactgCACGTCTGGAA
>TU176631
TATCAAAAGAGAACTTGCAAAGAAATGTgacagaaaaaagacaaatattgcACTCCACTTTCAATATTTCTTTTCCTGCTTACTCAAGCACAGCTTGTGATACAGTTCGTGAGGGTCACACACCAACCCTGTTTATCCCACACAGTAGTTTGCGCAGGAAACTATAATAGTGACGGATGGCATCTTTGAACCAATCAACAAAATGCTTTGACAGGAAGCTGACCAATCCCGTGTTTATGTCAGCGGGGGCGGGGATTACAGTGAATCTACCTGGCAACAGCACCTGAAGGATCGGCAGAGAGCACCGAGCTGGGACTGCTTTGCTTTGCAGGCTCTTGTATTTCTCCGGTCGGGCTTTGCTCTTGTTTGAAGGCTGAAGATGGTGTCCCACTCCCTGACCCTGCCGATGATCTGCTTCACGACGCTGTGGGCGCTGGTGGGATGTGTCGCCCCTTGGTTCGTCCCGAAAGGACCCAACCGGGGTGTTGTCATCACAATGCTGATATTGACAGCAATCTGTTGCTACTTATTCTGGCTTATAGCAATCCTGGCCCAGGCTAACCCTCTCTTCGGACCACAGCTGAAGAATGAAACCATCTGGTACCTGCGGTATTATTGGGAGTAAATTACTTGTGTGTGACCATGATCTTTGGGGGCCAACcctttccattccattccaagAGACACAGTTTTAATTTGGGCCTCTCCAAGGGCCTCAGTCACAGCAGCAGTGAGGAAGAGGAGCCCATCAAACACATTGCACCTTCACGATTCCTGCAAGCTCAAGCCCCGGGGCATCCCTTCCCTGGAGTCGGGGCTTCTCTACAGTCACAAATCCAAGCCAAAATAATAAGGATGCTGCTGTGATTTCTTTCTCTGTCCTTAAGGTGTAATAACCCAGGCTTTAGCATTTCTTTTCCTTGTATTACCATGAGGTATGTTCTGATTGAATGGGATAAATAATGAcgattaattatatttttaaaaaccatgaaaaattatgagaaatggaaatgtaaagcCTATGTTATCTGGCCTACTTCACATGACTTATTGTCTACTTTAGAAGTTTAATGTTGATAGACTCTGCTAGTAGTCAGTGAATTGGAAGTAAGTTTCTGTCAACTGTAACctatatattaatcatattaGTCCTAGTTCAATTATTGCAATGTGCAGAGGAAGAAGATTTCGTAATTTATATGCAATATTTTGTCAAAGATCCCAATTAAATTCTCCCTCATGCACTTAATTACAAATGTCCTCTTCCTCACAGCCCTTCAATCATATATCTGTATGTAACTGAACCtgacaaatgcatatttatatatttatttatttatttatttagttgtctgtatttctgtatttattttattgatctgTATTTTCAGGCCGGTGTCATGTAGTGATTGCATTAATGTGAAAGGTAAAACCTGCTCTGGTAATATTGTACTTAGGTTCTGAAATGTCTGATCCTTGATGGCTTTGGAAAGTAAGCTTTTTGCTGACTGTAGATTTTTACATTACTATCTAATCTTTAGTTACAAACTATCTTAGTTACTTAAAACTATTAAAGCTGTACATCCCTGTTTTTAAAGGTACTTTAATGATTCCTCTAGGTATTGGGGTTATATGCccatattattataaacattattattgttattttgtgtgtgattataattatgtaatagtgcaattatatacataaacaataatgaaaactttGAGAAGTGATCAGTGATTAAGACTTGCAAACCCTACCAAGAGGGTCTTTTATTGATACAGCATAATAGGAAAAGTAAGACCTGTATTTCTTATTCAGCTAAAAATCATTAAAGTTGATATGTTTAGTGGATAATTGTGTATATAAGttaaaacttgaaaaatgtaaCTCCAATTGCATTCCCGAGTTAAGATTCTTTGGTCAGCTTGCATCAGATTGTTCAAAACTGAAAGGGTATTATCTGATTAGTTGATGAATGGATAACGGTTGTGTCTTTATGGAAATGgtaaatctgaaataaactgCACGTCTGGAA

Function

NR:

description
V-type proton ATPase subunit e 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003066 False 1729 mRNA 0.38 4 10681015 10683612
TU176631 True 2045 lncRNA 0.39 4 10680771 10683612
Loading

Neighbor

gene id symbol gene type direction distance location
AMCG00003057 NA coding upstream 58623 10612506 ~ 10622148 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding upstream 115153 10543469 ~ 10565618 (+)
AMCG00003053 NA coding upstream 195929 10462276 ~ 10484842 (+)
AMCG00003050 NA coding upstream 354557 10325714 ~ 10326214 (+)
AMCG00003051 pi4k2a,LOC105896299 coding upstream 362972 10309072 ~ 10317799 (+)
AMCG00003065 NA coding downstream 2658 10686270 ~ 10693974 (+)
AMCG00003064 slc25a28,LOC107601050 coding downstream 22021 10705633 ~ 10719938 (+)
AMCG00003070 got1,LOC105006879,LOC107601049,LOC107665595 coding downstream 97389 10781001 ~ 10787555 (+)
AMCG00003075 hpse2,LOC107747298,LOC107665577 coding downstream 135292 10818904 ~ 10824933 (+)
AMCG00003076 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107586094 coding downstream 177086 10860698 ~ 10862116 (+)
G140436 NA non-coding upstream 23780 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 48282 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 52889 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 390836 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 429246 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 523894 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 561644 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 797193 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 804618 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 854035 11537647 ~ 11537954 (+)
AMCG00003019 NA other upstream 827318 9844776 ~ 9853453 (+)
G140189 NA other upstream 900319 9778250 ~ 9780452 (+)
G140030 NA other upstream 1350307 9325488 ~ 9330464 (+)
AMCG00002998 NA other upstream 1364138 9300311 ~ 9316633 (+)
AMCG00002996 NA other upstream 1436672 9236740 ~ 9244099 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other downstream 71289 10754901 ~ 10756840 (+)
G140613 NA other downstream 525961 11209573 ~ 11212111 (+)
G140693 NA other downstream 802579 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1688387 12371999 ~ 12678159 (+)
G140939 NA other downstream 2047119 12730731 ~ 12739767 (+)

Expression

AMCG00003066(LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480) Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 600.
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AMCG00003066(LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480) Expression in each Bioproject

Bar chart with 7 bars.
AMCG00003066(LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 500.
End of interactive chart.

Co-expression Network