AMCG00003069 (nkx23,LOC106591187)


Basic Information

Item Value
gene id AMCG00003069
gene name nkx23,LOC106591187
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10756141 ~ 10758646 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003069
CACAATTGCGACGTTCGTGTGAAATAATTTGACCAGAGGGCTTATTCTTCGCAACTCCTTTTCGGCGGAGTTCATTTCCTTCATGTGAAGGCGCAGGACCTGATAATGCTTCCAAGTCCAGTCACTTCTACACCTTTCTCTGTCAAAGACATCCTGAATCTGGAGCAGCAGTCTCAGCAGCACCCCGTCCTGCTACTAGAGCACCCCCATGCGCAGTTGCACCCGGACTTGCAGCCGCAGCAGCACTTCCACACCCCGCCTTCTTGCATGCTCGCCGCTGGGGAGAGCCCTAGCTTCTCGGACGGGGAGGAGAAGATGTCCTACCTGAACTCGCTCTCGGTACCGGACAGCCATGGGGAGGCCAGCATCTCTCCGGATCTGTATGTGCACACGGCGCTGGGACACTCAGCTGAGACCAAACTGGAGGCCGAACTCGAGGATCAGGAACCCAAAAACTGCATTGTCACAAAGTACAAATGCAAACGGCAGCGCCAGGACAAGTCGCTGGAAATGGCCGGCCACCACCATCCCCCGCCGCCCAGGAGGGTGGCAGTGCCCGTTTTGGTCCGGGATGGAAAACCTTGTTTAGGGGGATCACAGAACTATAATGCCCCCTATAGTGTAGGGGCAAACCCTTACAGCTATAATAGTTACCCTGCTTATTCCTACAACAACCCTGGATATAATTCCAGTTACAGCTGTACGTATTCCAGTATCCCAGCTctaccccccaccaccactgcCAACGCGTTTATGAACATGAACCTCAGCAATATCGCCAGCCTCGGCAGCTCTGCCCAGCCTCAGACACACCAGGGCAGCGCGGTGTCGCCGTGCCAAGGGACACTGCAGGGCATCCGAGCCTGGTAG

Function

NR:

description
PREDICTED: homeobox protein Nkx-2.3-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003069 True 870 mRNA 0.56 3 10756141 10758646

Neighbor

gene id symbol gene type direction distance location
AMCG00003068 NA coding downstream 12451 10730942 ~ 10743690 (-)
AMCG00003067 NA coding downstream 55528 10694592 ~ 10700613 (-)
AMCG00003061 NA coding downstream 76309 10670505 ~ 10679832 (-)
AMCG00003062 NA coding downstream 94038 10657061 ~ 10662103 (-)
AMCG00003059 NA coding downstream 108231 10624960 ~ 10647910 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding upstream 35408 10794054 ~ 10807733 (-)
AMCG00003080 NA coding upstream 149346 10907992 ~ 10912581 (-)
AMCG00003078 NA coding upstream 160503 10919149 ~ 10923578 (-)
AMCG00003081 NA coding upstream 186373 10945019 ~ 10951437 (-)
AMCG00003079 NA coding upstream 195942 10954588 ~ 10956401 (-)
G140458 NA non-coding downstream 99144 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 132399 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 416881 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 718284 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 866515 9889158 ~ 9889626 (-)
G140521 NA non-coding upstream 60123 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 167472 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 206886 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 252492 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 348750 11107396 ~ 11107604 (-)
AMCG00003049 NA other downstream 424769 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1148825 9596943 ~ 9607316 (-)
G140015 NA other downstream 1518411 9236658 ~ 9237730 (-)
G140006 NA other downstream 1908301 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2261545 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 849817 11608463 ~ 11622649 (-)
G140758 NA other upstream 882170 11640816 ~ 11647619 (-)
G140757 NA other upstream 935360 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1969592 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2092375 12851021 ~ 12855341 (-)

Expression


Co-expression Network