AMCG00003070 (got1,LOC105006879,LOC107601049,LOC107665595)


Basic Information

Item Value
gene id AMCG00003070
gene name got1,LOC105006879,LOC107601049,LOC107665595
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10781001 ~ 10787555 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003070
CTGACGCCCACCCTATTCCTGCAGGACTTGAAGGTGAAagtactgtgctgtgttttgtgtggcCGGGTTGTCGTTTCTGGATCAGATTGAAGTGTTTGCATCACAAGCTTAGCCACACCATCCGCTATGTCCCTGTTCGCAGAGGTCCCGCAAGCCGCTCCGGTAGCAGTGTTTAAATTGACTGCGGATTTCCGAGAGGACAAACACCCCAGCAAGGTTAACCTAGGAGTGGGAGCCTACCGGACAGATGACTGCCAGCCCTGGGTGTTGCCGGTGGTGCGGAAAGTGGAGCAGATTATTGCAGCCGACCACAGCTTGAACCACGAGTACCTCCCCATCCTGGGGCTCCCTGAGTTCAGGTCCAGCTCCTCCAAGATCGCCCTGGGAGAGGACAACCCTGCCATCCAAGAGAACAGGGTGGGGGGTGTGCAGTGTTTGGGAGGGACAGGGGCTCTGAAGATAGGGTCTGAGTTTCTCCGCCGCTGGTACAACGGGCACAACAACACCTCCACACCTGTCTATATCTCTGCACCATCCTGGGAAAACCACAATGCTGTCTTCATGGACTCTGGGTTTAAAGACATCCGTGCCTATCGGTACTGGGATGCTGAGAAACGGGGTTTGGCACTGGCTGGACTCTTGGAAGACCTAGAGAATGCTCCAGAGAACTCCATCTTTGTTCTTCATGCCTGTGCCCACAACCCCACGGGCACTGACCCCACCCCAGATGAGTGGAAGCAGATCGCCAAGGTCATGAAGAAGAGGAAGCTCTTTGCCTTCTTCGACTCTGCCTACCAGGGCTTTGCATCTGGCAATCTGGAGAAGGATGCCTGGGCTATCCGTTACTTTGTGGCCCAAGGCTTTGAGCTCTTCTGCGCACAGTCCTTCTCCAAGAACTTCGGCCTGTACAATGAGAGAGTGGGCAACCTCACTGTTGTGGCGAAGGATTCAGACAATTTGACCCGGGTCCTCTCCCAGATGGAGAAGATCGTCCGTACCACCTGGTCTAATCCCCCATCGCAAGGGGCCCGCATTGTTGCCACCACACTCAACAACCCTGAACTCTTCACAGAATGGAAGGATAATGTGAAGACGATGGCTGATAGGGTCCTGCTGATGAGGGCCCAGCTGAAGGCCAAGCTGCAGGACCTGGGGACTCCTGGAACCTGGGACCACATCACCCAGCAGATCGGCATGTTCAGCTTCACCGGCCTCAACCCCAAGCAGGTGGAGTACATGATCAAGGAGAAGCATGTGTACCTCATGGCCAGCGGGCGCATCAATATGTGCGGCCTGACCACCAAGAACCTGGATTACGTAGCCGAGTCCATCCACGAAACTGTGACCAAGATCCAGTAGGACCTCCCCTGACCGGACCCTCGCTCCCGACCCCGATTGTCACCACGACACCGAGAGACAGCCACCACGCCCCCTGCTGCACGGCTCTGCCAGCAAACCGGCTCCAGCTGGCTGAGCACACGTGTCTGTAGATGCAGTATAGTTCAAAGTTTAAATGCCTTAGTCTGTGATTTCAAATAGGTctaacattttaaaccattttatcaATCCCTCTTTATCGCCCAGTTCCAGTGTAGTTTTCGGTTTCCGTTCCCTGCACTGAGCAATGTAACACTGTTTTATCAGTATTACTCAGTCCCATGTGATTTCCTTTAAAGAAGCCCAATTCTTATCCATTTTGCTGTTGAATTGTGACTTTCAGAAGCTTCACAACCGGTTATCCTTGAAGTTTTATTCTTCTGAATCACAAGAGTTTAAAACTCTTGTGGGaagatgtttttaaagtgtgaaTAGGAATCTATGAATGATgtaatgttgattttattttttaattttcttgtatAGAACAAAGGTGCATAATTCTTTGAGCTGTAAAAGTCCTGAACTCCTGATGAATTCAAGTCTTGAATCAGCACACACTCAGTCCATGTCTGCCTAGTTGTGtgtaatgattttttattttattttaccctgTATTTACTTTCATAGATTACTTGGAAGACGATTTCACTGTTGGGGATTGTTAGTAcggtttaaatatttgaatgtgacTCATTTCAACAAAAGCTTCAACTGAACAAAAAGCTCCAGCTTCACAACGTCCCAACCAGATAATTATTATGAAGTCACTTATTCGCTTGCTTTCTGTAATATCTGTAAAGTGGAAGCAGTGACATCTCCTGGTCTAATGTATAATGGTTTAGCCTTTCattgtgatgtatttatgtgcTGTATAGATCTTCCCTCTTCACAGTTGTACACTTGGTTATGAAGAAGGgttgagtgtgtgagtgtctgtgcaCTCTGACCACAGGCCTCTACATTTGGGAGAAGtgcaagaaatacatttgtgctGAAGTACATTtgggaaataaattatatgaataga

Function

symbol description
got1 Predicted to enable L-aspartate:2-oxoglutarate aminotransferase activity. Predicted to be involved in aspartate biosynthetic process. Predicted to act upstream of or within biosynthetic process and cellular amino acid metabolic process. Predicted to be active in cytosol. Is expressed in retina. Human ortholog(s) of this gene implicated in amyloidosis; amyotrophic lateral sclerosis; pancreatic ductal adenocarcinoma; and transient cerebral ischemia. Orthologous to human GOT1 (glutamic-oxaloacetic transaminase 1).

NR:

description
aspartate aminotransferase, cytoplasmic

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14454 GOT1; aspartate aminotransferase, cytoplasmic

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003070 True 2407 mRNA 0.48 9 10781001 10787555

Neighbor

gene id symbol gene type direction distance location
AMCG00003064 slc25a28,LOC107601050 coding upstream 61063 10705633 ~ 10719938 (+)
AMCG00003065 NA coding upstream 87027 10686270 ~ 10693974 (+)
AMCG00003057 NA coding upstream 158853 10612506 ~ 10622148 (+)
AMCG00003058 LOC108443489,LOC103368019,LOC108258460 coding upstream 215383 10543469 ~ 10565618 (+)
AMCG00003053 NA coding upstream 296159 10462276 ~ 10484842 (+)
AMCG00003075 hpse2,LOC107747298,LOC107665577 coding downstream 31349 10818904 ~ 10824933 (+)
AMCG00003076 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107586094 coding downstream 73143 10860698 ~ 10862116 (+)
AMCG00003077 NA coding downstream 79084 10866639 ~ 10881830 (+)
AMCG00003073 NA coding downstream 113260 10900815 ~ 10907710 (+)
AMCG00003074 NA coding downstream 128062 10915617 ~ 10918044 (+)
G140436 NA non-coding upstream 124010 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 148512 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 153119 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 491066 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 529476 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 419951 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 457701 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 693250 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 700675 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 750092 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 24161 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 97389 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 927548 9844776 ~ 9853453 (+)
G140189 NA other upstream 1000549 9778250 ~ 9780452 (+)
G140030 NA other upstream 1450537 9325488 ~ 9330464 (+)
G140613 NA other downstream 422018 11209573 ~ 11212111 (+)
G140693 NA other downstream 698636 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1584444 12371999 ~ 12678159 (+)
G140939 NA other downstream 1943176 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 2091130 12878685 ~ 12882998 (+)

Expression


Co-expression Network