AMCG00003071 (LOC106591176,LOC103370034,LOC106591308,LOC103383202)


Basic Information

Item Value
gene id AMCG00003071
gene name LOC106591176,LOC103370034,LOC106591308,LOC103383202
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10794054 ~ 10807733 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003071
ATGGCTGCGGATGCTGCGGCTGCACTCGCATCCCTCTGCATCCCGAGACCCCCTCCCCTGCCTCTGCTCTTCGTCTTCGCCATTTCTTTCCCCGCCTCGGCCCTGGGCTTGCTCGGGTTCCGGCCGGAGGACACCGGGGGAGAGCTGTCCGTGGAAGACGGGGTGCTGAAGGCGACCGAAGGAACACGGTTCAGGCTGCGTGTGTACTATGCAGCATCCCAGCAGAGACTCAACAGGACCGTCGGCGGCAGAGCCGGGGAGGCAGCTACTGCGCCGTGGATCGCCTTTATCGAAGAGCCGACCCCGGGCAGGGAAGGGCAGGTGCATCCCAAACGGAACCCATGCCTGGACAAGAACGCCAGGACCTCCGACATCGAGTTGCTGGGCTCGTTCAAATCCACCTACAGCCAGAATTCAATCTTGGTGGAGCTTCTGGCTAAGGACCTGCGCAGAGGTGAGAAAATCAAATATTATTCTATGTGTGCCTTTGATGGGGCCAAGTGGGAGCACTTAAGGACTAGAGATTTTTGGCTGGCTGTGGTGGAGCGTCCCACAGAGGCCGACCTTTGGATGCAGGTGTTGGTGTCAGTGGTGCTGTTGACGTTTTCCGCTCTGTTCAGCGGGCTCAACctgagcctgctggccctggaTCCCGTGGAGCTGCGAGTGATCCAGAACAGCGGCACCGAGAAGGAGCAGAAGTATGCCCGCACAATAGAGTCGGTCCGAAAGCACGGCAATTACGTGCTGTGCACCTTACTCCTGGGCAACGCGCTCATCAACGCGTCTTTAGCGGTGTGGATGTGCCAGATATTAGGACTGACATGGCTCTCTATTCTGGTCTGCACTTTTGGTATCTTCTTTATCGGGGAGATCCTACCGCACTCTATTGCCTCCAGACACGGGCTAGCTGTCGCATCCAAGACCATATGGGTAACTCGTCTATTAATGGTGATATCCTTCCCTATCTCCTATCCGATCAGCAAGCTCCTGGACACCATCCTGCACCAGGAGATCAGCAACTTTTACACACGGGAGAAGTTACTGGAGATGCTGCGTGTGACGGACCCATACCACGACCTAGTGAAAGAAGAGTTAAACATCATACAGGGCGCCTTGGAGCTCAGGACAAAAACAGTGGAAGATGTGCTGACACCGCTGAACGACTGCTTCATGTTGGTCCTGGATGCCGTGCTGGATTTCAACACCATGTCGGAGATCATGCAGAGCGGATACACCCGCATCCCAGTGTACGAGAACGAGAGGTCCAACATCGTGGACATCCTCTTCGTCAAAGACCTGGCCTTCGTGGATCCAGATGACTGCACCCCTTTAAAGACCATCACGCAGTTTTACAACCATCCCCTGCACTGTGTTTTTAACGACACCAAGCTGGATGCAATGTTGGAGGAGTTTAAGAAAGGTAAATCGCACCTGGCCATCGTGCAGCGCGTGAATAACGAGGGGGAGGGCGACCCTTTCTACGAGGTGATGGGCATCGTCACTCTGGAGGACATCATCGAGGAGATCATCAAGTCAGAGATCCTGGATGAGACCGACCTGTACActGACAACCGCACCAAGAGGAGGGTGTCGCACCATGAAAGGAAGCAGCAAGACTTCTCCCTCTTCAAGCTGTCAGAGAATGAAATGACAGTGAAGATCTCTCCCCAGCTGCTCCTGGCCACACACCGATTCCTGGCAACAGAAGTGGAGCCCTTCAAGACCTCACACCTCTCAGAGAAGATCCTCCTGCGCCTGCTGAAGCACCCCAACATTGTCCAGGATCTCAAGTTTGATGAGAAACACAAACGTGCGCCACAGCACTTCCTGTACCAGCGCAACAAGCCGGTTGATTATTTTGTCCTCATCCTTCAGGGCCGAGTGGAGGTGGAGATTGGAAAAGAAGCTCTACGCTTTGAAAATGGCGCTTTTACCTACTATGGCGTGCCTGCCATCATGTCCACACTGTCCTCGGTCCACAGGTCACCGTCTCGCAGCAGCGGACTCAACCACTCCGACTCCATGATCTACGGGGGCAGCATGAGCCAGCTCAACACGGGCAACAACGCGTACCTGCCTGACTACTCTGTCCGCCAGCTTACTGACCTGCAGATCATCAAGATCACACGCAGTCACTACCAGAACGCCCTGACAGCCACCCGCATCGACAGCTCCCCGCAGACGCCCGACACGGACGCCCAGGTGAACGAAGAGTGCACGCCCACCCCCGAGGAACCCGTCCCTGAGGCTCGCTCCATCAGCATCCCCCTGCCCCTCCCGGAGCCCAACGTCGTGGCCACACGGAGCAGGCCTCTCATCAGCAGGATCCAGCACAGCACCACACTGCTCAACGAGAAGAACCGCATCGTCCGCAGCAAGTCCGATGGCCAGAAGAGCCCCAGTGATTCGGTGTTCCTGCGGATGGATGAGATTCCTTACATCAGGGAGGACCTGGCTGACCGTTCGGAGAGTAACGGGAAACACAATAAGGACAGTGCCGCAGTTCCCATGGAAACAGTGCACCCCACCTCCCCTTTCATCAGCAGTCTGTCTCTGAGCGCCTCCGATGAAAATCTGGGCAAGAAACTCCTGCGCAAACTCAGcaataaaaagaggaaaaagtcTCGAGATGGGGAGAAAACCCCAGAGGATAACCCCGAACTGCCTCTGATGAAGACTTAG

Function

NR:

description
PREDICTED: metal transporter CNNM1-like

GO: NA

KEGG:

id description
K16302 CNNM; metal transporter CNNM

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003071 True 2685 mRNA 0.56 10 10794054 10807733

Neighbor

gene id symbol gene type direction distance location
AMCG00003069 nkx23,LOC106591187 coding downstream 35408 10756141 ~ 10758646 (-)
AMCG00003068 NA coding downstream 50364 10730942 ~ 10743690 (-)
AMCG00003067 NA coding downstream 93441 10694592 ~ 10700613 (-)
AMCG00003061 NA coding downstream 114222 10670505 ~ 10679832 (-)
AMCG00003062 NA coding downstream 131951 10657061 ~ 10662103 (-)
AMCG00003080 NA coding upstream 100259 10907992 ~ 10912581 (-)
AMCG00003078 NA coding upstream 111416 10919149 ~ 10923578 (-)
AMCG00003081 NA coding upstream 137286 10945019 ~ 10951437 (-)
AMCG00003079 NA coding upstream 146855 10954588 ~ 10956401 (-)
AMCG00003089 tacr2,LOC107666460 coding upstream 232604 11040337 ~ 11047762 (-)
G140458 NA non-coding downstream 137057 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 170312 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 454794 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 756197 10036178 ~ 10037857 (-)
G140228 NA non-coding downstream 904428 9889158 ~ 9889626 (-)
G140521 NA non-coding upstream 11036 10818769 ~ 10819159 (-)
G140537 NA non-coding upstream 118385 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 157799 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 203405 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 299663 11107396 ~ 11107604 (-)
AMCG00003049 NA other downstream 462682 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1186738 9596943 ~ 9607316 (-)
G140015 NA other downstream 1556324 9236658 ~ 9237730 (-)
G140006 NA other downstream 1946214 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2299458 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 800730 11608463 ~ 11622649 (-)
G140758 NA other upstream 833083 11640816 ~ 11647619 (-)
G140757 NA other upstream 886273 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1920505 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 2043288 12851021 ~ 12855341 (-)

Expression


Co-expression Network