AMCG00003073


Basic Information

Item Value
gene id AMCG00003073
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10900815 ~ 10907710 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003073
ATGCCGCAGATACGCGCACACGTCGCTGGTCACATGACAGGAGCAGCCGCTTGTTTCGGAAGTGCAGGACTGGGACGGGCACTGATGAAGTGTCTATTGGTAGCCAGCGATAATGCGGAGGTCCTGTTCTACTGGACCGACCCGGCCTTCGAGAGCAACATCCAGGACCAGTATGGAGCCGCACAGCAGGGAGGGGAACGGCCCCCAGCTTTTGAAGACAGCATCAACACACTCTTCGCGCCCCTCATCATCTCCTGCAGCACCATGATTGAGAAGATCAATGACACCTACACCTGCTTCAGCACTGAGAATGGACACACCTACATCCTCCATCAGtttgGGGAGTGCATATACATTGCCGTGAATGGAGATGGGGAGGAGAGTGAGGATGACTTGAGGAGGAAGATCTACGTGTTGAAGAAGCTGATAGAGGTGCACTTTGGGATGGTGACTCTCAATGGCACCCTCTTGAGGAAAGAACTTCGCCCCCAGGACACGGAGCAGCGACACCGCCTCTGGAAGATGTTGCAAAGCCTACTTAGCACTTATAGCCGTCTGAGAGATCAGGACCAGAGCTTTCTGGTCGAGGCCGTAGAGAGGTTGATCCAGCCGGCACTGTGTGAGCAGTGCATTGAGTTCCTGGAGCGCCGGCTGGTCCAGCAGATCAACAGCAGCGTGGAGCGGGGAGGGGAGGAGGTGCTGCACGCCTTCATACTGGTGCACAGCAAGCTGCTGGCCTTCTACTCCAGCCGAAATGCCAGTACAGTCAGACCTTCGGACCTGCTGGCCTTGATCCTGATTGTGCAGAACCTGTATCCCAGCAGCAGTGATCAGGAGGACTCGGCCCCAGAGGAGTTGGATGGCAGTTCAGCACCCGATGTCTTCTACACCCCAGAAAACTCCCCCTCTAGCAGGGATTCAGACTCCGTGGGGATGGAAAGGGAGAGCACTCCCGTGTTCCAGTTTGTTGACCCAGATATCCAGatggCAGAGGACAGCCTGAAGACCCTAGAAGCCCCACCCCCTGACCCTGCAACGCCCCTCAGGGTCTTCCTAGATGCCACTGTCAAGGAGGGCCACTGTCCCATGATGCCTCACTCCATGTACTGTCTACAGCTCTGGCCTGGTATCACTCTGGTGCTACTGACAAAGATCCCCCATACCCAGGTGGCTGTGTCTCTATACACGTACCTGGATGCCTTCACGGTGCTGGAGAAAAAACTAAGTGATGTGCAGGAGGGAAGTGCACCCCCCCGCTCTCCATCCCCTCTCCCTGACCTCCGCAGCAAGATGGACAAGTTCATCCGGGCTCTGAGCAACAGCGATGTCCAGTTTGCCCAGCTACAGGACACCTGGGCAGCCTTTAAGAACAAAGCATTTGCAAGAGGCAGCACGGGGAACAGTAGGGATCTCCTGCCGTCGTGCCGTGCCATGAAGACCCAGCTGTGTGCCATCTTCAGGCAGTACTTCCTGATAGAGAGTGCAGGGAGCCCCCAGCGCCTGGCCCCCAGTCTGCAGGAGAGGGCCCTGGCCATGGTGCAAGACAAGCTAATGGATTGGAAGGACTTCCTGCTGGTGAAAAGCAGGAGGAACATCACCATGGTGTCATATCCTTTCAGGGCAGCAGTCTCATTCCTTAACTCTCTTATCACATACCTGGAGGACTTCCCTGGGCTCGTTCACTTCATCTACGTGGATCGAACCGCAGGCCAGATGATCGCCCCGTCCCTCAATGTAACGGACCGCTCGACCTCGGAGCTGGGGAAGGGGCCTCTCCCACACTTTGTCAAGAGCAAGGTGTGGAGTCTGGTGGGAACAGCAAGGCGCTACCTTCAGAAAGGCTACACCACCGTGACCCTGCGTGACGGAGACTACTACTTCTGTTACTTTCTATGGTTTGAGAATGAGACGGGGTACAAGCTGGAAGTGATAGAGCTGCCAACCCTCCCTGACGACTCTGCTCCTATTGGCATGCTGGCTGGGGACTATTACAGGAAGCTCTTGAGGTACTACAGCAAGAATCACCATGCGGAGGTTGTGAAGTGCTATGAGTTACTGACCATCCACCTAGGAGTTATCCCTACTGAGTATATCCTACAGCACTGCTGCCAGCTGGCCAGGAAACTGTGGGAGCCCTCCCGCATCCCCCTGCTTTAGACGCCGGGGGCAGCAGCACGCCTCGCTTACCATACGGGTCCCTGCCTCTCTGTTGATGTCAGCTCTGCCTGCTGTAACCCCTGACGGCATATCCACCGCTCACTGCACCGCTTAGTGTACCTGCATCGCTTTCTCCCTTTCCACAGTGTTGTCTCACTGTTTGTGCCTTATGGGAATTCAGTGGCCTGCAGGTACGctttaatattgatttttgcTACACCTCTAAGGCTGTGAATGGGCAGAGTTAGTGCTGCCTAATGTGTTGAACATGCAGAAGTGCTCAAATATCATAAGATTTCCCTAGTCTGACACTGGAGTTCATACCCATACATCAGATGCCTCATATCCACtgcaaacaacatttttttaatattcactATTCGTCCTCTTTTATTATTGATGGTTTTAACTTGGAGGTTAActatcattttcttttgctgacatctttattaattttaaaagccgATACTACAGTGTGCTGATTTTTCATGAAGGACATTCTTTACTCTCTTTAGTTCAACGGCTCCTTTTGCACCGACTCTTGAAAATGTCTTATTACCGATGATTTTACTTGTCAAATTCAGAACTGCCTTCTCTTACAATGTACACTGAGAGACCCTCTACTTGCTGTTCACTAAAATCACTGTACTTTTCCACTCAAAGATATATATCTTATATGAAGTAGCTATAGCAGATGAAAATTTTGAAGTATATATTATTAGGTTATTCCATGTATAACTATACTGCAGGATTACAATGCTGTACTTTATCATTTCAGAAGTTGCCATTTTTGAATAATGtgaactgttttatattttttattgtaattattctttcattattgcgatattaaaatcatatttttaa

Function

GO: NA

KEGG:

id description
K20193 HPS1; Hermansky-Pudlak syndrome 1 protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003073 True 3024 mRNA 0.51 18 10900815 10907710

Neighbor

gene id symbol gene type direction distance location
AMCG00003077 NA coding upstream 18985 10866639 ~ 10881830 (+)
AMCG00003076 hpse2,LOC107747298,LOC107665577,LOC107702736,LOC107586094 coding upstream 38699 10860698 ~ 10862116 (+)
AMCG00003075 hpse2,LOC107747298,LOC107665577 coding upstream 75882 10818904 ~ 10824933 (+)
AMCG00003070 got1,LOC105006879,LOC107601049,LOC107665595 coding upstream 113260 10781001 ~ 10787555 (+)
AMCG00003064 slc25a28,LOC107601050 coding upstream 180877 10705633 ~ 10719938 (+)
AMCG00003074 NA coding downstream 7907 10915617 ~ 10918044 (+)
AMCG00003072 LOC108414772 coding downstream 14886 10922596 ~ 10941584 (+)
AMCG00003084 NA coding downstream 52269 10959979 ~ 10961493 (+)
AMCG00003086 NA coding downstream 55496 10963206 ~ 10967428 (+)
AMCG00003082 NA coding downstream 65779 10973489 ~ 10982163 (+)
G140436 NA non-coding upstream 243824 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 268326 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 272933 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 610880 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 649290 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 299796 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 337546 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 573095 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 580520 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 629937 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 143975 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 217203 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1047362 9844776 ~ 9853453 (+)
G140189 NA other upstream 1120363 9778250 ~ 9780452 (+)
G140030 NA other upstream 1570351 9325488 ~ 9330464 (+)
G140613 NA other downstream 301863 11209573 ~ 11212111 (+)
G140693 NA other downstream 578481 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1464289 12371999 ~ 12678159 (+)
G140939 NA other downstream 1823021 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1970975 12878685 ~ 12882998 (+)

Expression


Co-expression Network