AMCG00003078


Basic Information

Item Value
gene id AMCG00003078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10919149 ~ 10923578 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003078
CGCCGACCGGGCATCCAGCATGGGCACAGCACAGTGTGCCCGTTCACACAGCCAAGGACAGCCACTGGCAGACCTGCACACTGCCCATTCGTGGGACTACAGATTCATTTGCAAGCGGCTGATACAAAACAGACTGAAATTGCCGACTTACTGTTTTTGAAGTAAAGATACAGATGGCCGGCCCAGTCCCACCCTCCTCTCACGCAGTCGCTCTGCTGAATGAGCTGAACTCTCAGAGGATGGAAGGCCGCTTCTGTGACTGTGTGATCAGACTACAGCCCCACCCAGAAAAACTCTACACGGCCCATAAAAATGTGCTGGCTGCTTCAAGCCCTTTCTTGGCATCTCTATGTATTCAAGGGGTGGTGTTGGAGTTGGGGTTCTCTAGTCTCACCCCTGAAGTAATGGAGCTGCTCTTGGAGTTTATCTACACTGGCACCTTGCCTCCGCCCGAGCAGGAGGATTCGGTACGCTCTGCTGCGATCTATCTCGGGGTGGGAGGACTCCAGCAGGCTCTCAGACACAGAGATGCTGCTTTGTCTTGGTCACCTGGACAAGGAGAAAGAGCTCCAGCTAAGGACCAGGGAGCAGGTCAGGAGTGAtgacattacaaaaacacacagtctgcttatgtgtgtgcatgtctgctTGCTCCTATGTTCATATGTCTGTCAGTCCTGTCCTTTGTCACTAGAGCTGTCCATCCTTCCCTGTGTCCGTCGCCATTTGTGTCTGTCCATTCCATCATTGCAACAGCATTTATCTATGCCCATGCTTGCCACATTCAGCACTATTTGAGACaaggtggtgggggtggggagttAGTCTCCAACACAAATTCAATCTGCCTTGAAtttgtgacatttttgtttggGATGAATCATTGCCAAACAGCATCACATTAGATGCAAGACATttgaactacattttaaaatcatatttaaacacTCCTTATTTTCCCTGCCAGCTGACTGGGAAACAAAcggaacacatataaaaagaCGATTGCTCGAGAACAGGCAAATTGCAAGAAATCTCCGATCCCCACCTCTCGATAAGGAATCTGAATCGGCCAAACAACTGATGTCCAGCTGTGAGGTAGTTCCTGTAATTTGGCACACGAATAACACTGAAAATCGAGGTATCCTCTCTCGCATCCCTGAGACAGAGATTCTTGCTCAAAGCAGGGCTTGTGGTTCAGTGCTGGAGGAGGTCTTTGGGGGCAGTGAAGTCAAGGAGGCAGATCACAGTGATCAACCATCAACAGTATGTCATTCTGGAAACCCAAACTATGGATTACAATATGGTTTATACGGGGCAGATTGTTCTGGAGGAGGAATTTTGGAGCAAGCAATTCATCCTTCAGTTTTGACTGGCACTGGAAATTGTGCCCCCCCTTGTTCTCCCATTAAAGAAACTGCTGCACTGTATGAAAGCACAAGAGACTTTCAAGATGAAAAATCATTTAGTGTCATAATGAACACACCTACCATGTCAGATGCCATCAGTGATCGTGATAACCCACTGGATAACCCAGTGGACAATGATGTTTTTGCTGAATCCACTGTAAGTTGTGCTGGGAGAAATGTAAACCAGAATGAATCGACTCCCGTTCACGAAAGCATTCACCATCGTTTTCACACGGATGAAAACATGAGTGATACTGAAAGTGACACAGATTCCACGAATCACGTGGCGGGAGCTGATGACTGTAGTACTAGTATTGTAAGTGGCAATCCAGTGACTTCAAAGGATGAGAGTTGCAGCTTTCTGAATGGAtcaatttttaaaagtaatacaataaataaaagtcacTATCACGTTGACTGTTCATCTGCAAACCCAAATTATACTCTGAACGGTAAAGCCAACCAAGCAAAGGAGAATACTACCAATTCTGTTTGTGACTCATGGTCTGTTTTGACTAAATCACCTGAAAAGATGGCACCTGTAGTTAAGATCAAAGAAAGCAGTAATAAGAAGGAACATAGGGATGACTGCCAGGGTGAAAAGTTCAAGTTTTTGATCAAATCATTTCCCGAAAGCAACACAATGACAAACACTGGTGAATATCCCACTGACACAGACAATCAAGCAGCCAGAGTCCAGGGCAGTGACAGCAGAAATGCACATGAAAATGACAGGGactctgaaaaagaaaaggaggatGTTTTTAGCCAACAACAGAAAGTCCAGACCTACCGCGGTCAAGTGACCTATATTTGTCTTCTGAAGGAAACAAGCGATGAAACAAgtgattctgaaaatgaaagaagtACCATTCTGGCAAAAGCTGCTGTTGAAGGGGCCACACGACCAAACCTTAATGCCGTCCTATTTCAGAGGGTTCAGGCAAAGGAAACCACTGTGAATTATAGAGCCCTCTCTCTGCCCCGTGTAGCTCAGCCTTACCagtgctctgtgtgtgagagaaattTCAGCCAGCGAGGCTCTCTGAACAGACACATGCGTTCCCACCTGGGTGTCCGGCCCTACCCCTGTCCTCAGTGCCCTATGACTTTCTCAAGACAGTACCGTGTCATAGAGCACATGCGTGTTCATCAAAGGGGGAATGAAGGCTGAGAGAGGGCAGGTCCTGGCTAACTCAATAAGCAAacttgacattttaataatcttaGTTGCTAAAATGCTACTGAAATGAACAATATCTGTGGAAGCGGGtacaaaaacaatgactttGACACCTAACCTTGAATCTTGTTTTTATATCATAGATACAATTTTGCGagtcaaaagttttttttaatcattattacttGGGTGGGGTCTGCTTTCTACAGAGGATTATTTGTGTGGATGTgttgtgaatttaaattattgCTCTTTAATGAGTTTATATAAACTAAAATGCCAGATTGTTCTGCAGAGATTCTAGATGTGATTATTTGTGATGGTCACAAATAAGGTGCTGTTTTCTATATGGTTctgtaatacaaaatgcaatgttaCCAAATAACAAgactataaaaaacaaaacatttaacaataccacaattagatgtttatttcaaatttattttacaacatggTACTGTGACTAAatgttgatatttatttatattcattgttGTTCATATAATCTTTTGTAacagcaagaaataaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003078 True 3124 mRNA 0.43 2 10919149 10923578

Neighbor

gene id symbol gene type direction distance location
AMCG00003080 NA coding downstream 6568 10907992 ~ 10912581 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding downstream 111416 10794054 ~ 10807733 (-)
AMCG00003069 nkx23,LOC106591187 coding downstream 160503 10756141 ~ 10758646 (-)
AMCG00003068 NA coding downstream 175459 10730942 ~ 10743690 (-)
AMCG00003067 NA coding downstream 218536 10694592 ~ 10700613 (-)
AMCG00003081 NA coding upstream 21441 10945019 ~ 10951437 (-)
AMCG00003079 NA coding upstream 31010 10954588 ~ 10956401 (-)
AMCG00003089 tacr2,LOC107666460 coding upstream 116759 11040337 ~ 11047762 (-)
AMCG00003106 hnrnph3,LOC108438202 coding upstream 214619 11138197 ~ 11166902 (-)
AMCG00003097 NA coding upstream 246962 11170540 ~ 11175031 (-)
G140521 NA non-coding downstream 99990 10818769 ~ 10819159 (-)
G140458 NA non-coding downstream 262152 10653325 ~ 10656997 (-)
G140456 NA non-coding downstream 295407 10622606 ~ 10623742 (-)
G140368 NA non-coding downstream 579889 10221780 ~ 10339260 (-)
G140279 NA non-coding downstream 881292 10036178 ~ 10037857 (-)
G140537 NA non-coding upstream 2540 10926118 ~ 10929972 (-)
G140546 NA non-coding upstream 41954 10965532 ~ 10967602 (-)
G140567 NA non-coding upstream 87560 11011138 ~ 11037311 (-)
G140588 NA non-coding upstream 183818 11107396 ~ 11107604 (-)
G140648 NA non-coding upstream 310090 11233668 ~ 11308389 (-)
AMCG00003049 NA other downstream 587777 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1311833 9596943 ~ 9607316 (-)
G140015 NA other downstream 1681419 9236658 ~ 9237730 (-)
G140006 NA other downstream 2071309 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2424553 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 684885 11608463 ~ 11622649 (-)
G140758 NA other upstream 717238 11640816 ~ 11647619 (-)
G140757 NA other upstream 770428 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1804660 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1927443 12851021 ~ 12855341 (-)

Expression


Co-expression Network