AMCG00003083 (vps26a,LOC107676600)


Basic Information

Item Value
gene id AMCG00003083
gene name vps26a,LOC107676600
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10986126 ~ 10994512 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003083
GAGCAAAAGAGGAACTGTCACATGACTGTGGACGGCGCTGCTCGGCGGGTCACATGACCAAAGAAGCAGGAGTTTAGGGAGGATTGCAGAGGGATCAGAGTTACGGAGATTCGTTGTGGAAACGGGCTGAAATGAGTTTCCTTGGGGGTTTGTTTGGTCCAGTGTGTGAAATCGATGTTATCCTCAATGATGCCGACACCAGGAAGACGGCCGAGATCAAGACTGAAGATGGCAAAGTGGAAAAGCATTTCCTGTTCTATGACGGAGAATCTGTTTCAGGGAAGGTGAACCTCACTGTGaaacagacagggaagagattaGAGCATCTGGGTATTCACATTGAATTTGTGGGACAGATTGAGCTGTTCAGTGACAAGAGCAACACTCATGAGTTTGTAAACCTGGTAAAGGAGCTGGCCCTGCCGGGGGAGCTGACGCAGAACCGGAGCTACGACTTTGAGTTCATGCAGGTTGAGAAGCCTTACGAGTCTTACATTGGAGCCAACGTGAGGCTCAGGTATTTTCTTAAAGTGACTATAGTGAGAAGACTGTCGGACCTGGTCAAGGAGTATGACCTCATTGTTCACCAGCTTGCTACGTACCCTGATGTGAATAATTCCATCAAGATGGAAGTGGGGATTGAGGACTGCCTACACATAGAGTTTGAATACAACAAGTCAAAGTACCACTTAAAAGATGTAATTGTGGGCAAAATATACTTCCTGTTAGTGAGAATTAAGATCCAGCACATGGAGCTACAGCTGATCAAGAAAGAGATCACCGGCATTGGACCCAGTACaactacagaaacagaaacaattgCCAAGTATGAAATCATGGATGGTGCTCCAGTGAAAGGGGAGTCCATCCCCATCAGACTCTTTCTGGCCGGCTATGACCTCACCCCAACCATGAGAGATGTGAACAAGAAGTTCTCCGTGCGGTACTTCCTCAACCTGGTTCTGGTAGACGAAGAGGACAGACGATACTTCAAACAGCAGgAGATCGTCCTGTGGAGAAAGGCTCCAGAGAAACTGAGGAAACGCAATTTCCACCAGCGCTATGAGTCTCCCGAGCCGCGGCCCACCCTGTCGGCTGAGCAGCCTGAAATGTGAAGAGCCTGAAAAGTAGGAAAAGTGAGCATGGCGGTTTCCACTCGGCAGCAAACTGGAAGAGAGCGAAAAAGAAAAACgacaaacaaaaagagagagagagcgagagcggcCAAACACCACCAACCCCACGTCTCACGGTCTTCCTTCCATGCGACACTGCAGCGCTCGCTCTGCCACCCCACTACGCATCCCGCGAGTGTCTGCAGACTCTCGATGTgagaaacacaacaacaaacactggAATACTCTGAAGCGCCCATTTCTTTTATACCACACATTTTACACACTTTCATTAACTTAATGCACTTGGATATGCaagaagtttaaaacaaaatgagaaagcgggaaaaaaaaaaacacacaaaaaaataacttatGTATTTCAACGAATGTTCCCATGCATGTAGGTTTGTTAATTTATATGGATAAATGACATGAAAATTGTTAGGTGTGGGCTTCAGGACCTGTCTTTAGAAACACTAAGGGACGAGGCATATGTGACCCCTGAATGCCATATACTTAATCCACTGTAAGATGTATAAGATTTATATCGGAGACTGTCTcctcaattatgtaattatttttgtctgattcacaccatttatttttgtttgttttccatgtaaCCGAATACTTTGTTACATACATTGAGGTATCTTTCTTCTATATTTTCCTCAATATAGGAAAATCTATGTTGGAACTATTGCTGTTACAAGAGGCTGTGAGAAAACTTtgattttccaaaaacaaaagtttggAGCCCTTTAGACTGAACAATTAAATGGGCTTTTAACAGTTCTCAATCTAAAATCAGGGGTATAAATAGGCCTACAGTggttggattttattttagttaatataaatataaattcccTTTAATTTTCTAGATTTTACACCTGTAACTTCTTCTGGTGGTACTGTATACAGGGAATTTcaactattgtgtgtgtgtgtgtgttagtagAAGGAAAATGGTTTTGGGAAGCTAACTGCACGTTGTATAAAATGCACAAGAGCTCGGAGCAGAATGGGCCACTTTCTTGTCACAGTTCACTGCACAGTCCTTCAGTTGCTGGTGACCATACACAGGCAATTTCCATTCCCTTTTTGTTGTATGTAAGTGCCTGtaaggaaatgaaaatgtatgccAAATATTGTCCTGGCCACGTGCATGATTTTCCCCTTTTTACAAtgcctaattaaaaaaaaaaaagacatttgcaagcattaaatactgtacatatcCAGCCTCAGACTATTTATCCATGTacaataaaagtttaaaatttcTACTGGTATTCTTACCATGTTCTGTCATTCTAAAGCcgttttgtttaagaaaaaaatcataatgtatATTGGAAAGAAACAGTACTTAATATTTTAGAATATGTATCTCAACATATGAATCTATATCAGTtagatttgtaattaaaaaataaactatttttaaaatgtcatataaATCAGAAAGTGGAAAATAAGAGTTGTATATGAAATGTTCATTTCAATCAGATAAAACTGGTTCCACATCATGTttgatttctaaattaaaactagttttctgattgttttctgTACAGGGTTTcatctattttgtatttctccCCTTTTAGTTAAAACGCAAATCTAGGAAGATAATTTCTGTCATACTGTAGGGAATGCAGGTTGTTGTATTTGAGAGTGTATTTGATGGTGTAAGGTTATCGCACAATAACCTTTATCAAGTCATTCTTGTATGCATTGCTCAGACGTTTAAAGTGCGTAACCCTGTTTAAAGTGAAATTGTGAAAAggatacaacaacaacagtttGTAAAGACATTATACTGTAGgatgaatatttaaatttgaattaagGAGCTGGTTGTACCAAATATGTGCATTGAAATGGATCACTTGGGTTTTGTTTGGAATACCCCTGCTGTGTGTGATACACAATTTTGTAACCTTGGACAGAATTATTGTTGTGTTAGTTCACTGCTGGCAGACCAAAGCATAACCAGTCCGTTCCAGATGTGACCTCTTACTGAACAATATTCAGCCTTTCCATCATCTAAGGCAAATCCATTAATCTGTGTAATCTAACATTAGATGTGTGATACAGATCTTTTTTATTGGTTACTTTTCATGCATTGTTCAGAAGAGTTTATTCTAAATAAAACGTTaattgaacaaatacaaa

Function

symbol description
vps26a Predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi. Predicted to act upstream of or within protein transport. Predicted to be located in early endosome and endosome membrane. Predicted to be part of retromer complex. Predicted to be active in endosome. Orthologous to human VPS26A (VPS26, retromer complex component A).

NR:

description
PREDICTED: vacuolar protein sorting-associated protein 26A

GO:

id name namespace
GO:0007034 vacuolar transport biological_process
GO:0015031 protein transport biological_process
GO:0010008 endosome membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0030904 retromer complex cellular_component

KEGG:

id description
K18466 VPS26; vacuolar protein sorting-associated protein 26

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003083 True 3299 mRNA 0.39 9 10986126 10994512

Neighbor

gene id symbol gene type direction distance location
AMCG00003082 NA coding upstream 3963 10973489 ~ 10982163 (+)
AMCG00003086 NA coding upstream 18698 10963206 ~ 10967428 (+)
AMCG00003084 NA coding upstream 24633 10959979 ~ 10961493 (+)
AMCG00003072 LOC108414772 coding upstream 44542 10922596 ~ 10941584 (+)
AMCG00003074 NA coding upstream 68082 10915617 ~ 10918044 (+)
AMCG00003087 supv3l1,LOC106589826,LOC102775654,LOC104944967 coding downstream 793 10995305 ~ 11002093 (+)
AMCG00003088 hkdc1,LOC103047009,LOC106612435,LOC107743550 coding downstream 9451 11003963 ~ 11015125 (+)
AMCG00003085 hk1,LOC107676584,LOC107666459 coding downstream 24530 11019042 ~ 11039328 (+)
AMCG00003092 NA coding downstream 58475 11052987 ~ 11105353 (+)
AMCG00003091 rufy2,LOC107725492,LOC107743555 coding downstream 124453 11118965 ~ 11139826 (+)
G140436 NA non-coding upstream 329135 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 353637 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 358244 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 696191 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 734601 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 212994 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 250744 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 486293 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 493718 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 543135 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 229286 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 302514 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1132673 9844776 ~ 9853453 (+)
G140189 NA other upstream 1205674 9778250 ~ 9780452 (+)
G140030 NA other upstream 1655662 9325488 ~ 9330464 (+)
G140613 NA other downstream 215061 11209573 ~ 11212111 (+)
G140693 NA other downstream 491679 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1377487 12371999 ~ 12678159 (+)
G140939 NA other downstream 1736219 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1884173 12878685 ~ 12882998 (+)

Expression


Co-expression Network