AMCG00003086


Basic Information

Item Value
gene id AMCG00003086
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 10963206 ~ 10967428 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003086
CCGAGCATCACATATTGTGCCGTAATCGATCTCAGCGTCGCCGAGTGCGCCTGCGCTgaccaagatggctgcctctatGAGCCCAGAGGAGAGATCTCTGTGCGAAAAATACAGCCGTGCAATCACGCTGTCTGAGGTCGAGTCCCGGAAGGACCCGGAGAACGACCCCTTCTGCTCCAAATACAAAGCCAGGGAGCTCCTGAAGGAGATACACAGCACCCTGCGGAACCTGTATGCTGGCGAGCATGACACCGACGAAGGGGATGGGGAGCAGCCGCTGGACGGGGCAGAAGGAGAGCTCGGCGGCAGCGCCTGCTCCGGGGATTCTCCAGCCGGCCTCCAAGCAGCCAGGCTGGGGGTGATTGAATATCATCTGGGGGTGAACCATGTGGAGACCGAGGAGCTGTCTGCCGGAGAGGAACATTTGATGAATTGTATCAAACTGCTGGATAAATACACCATCTCCCAGGAGAACATCTCTGTCTTCATACAGGCCAGGAACCAGCTGGGCATCCTATGGGCTGGCCGGGATGAAATCGAGAAGGCGCAGGGCTTTCTGGAGACGGCAGAGTCTCTGTACATACGCTACATGAAAGAGGATGGACAGCCTCCAATGGATCTCAGTGACTTCTTTCTGGCAGAAGAGGAAAAGCTGTCTGAACAAGAACGAACAAAGAGATTTGAGATGGCGCACACGTACACGCTGTACTACCTGGCACAGGTCTACAAGAACCTGGAGCAGTTTGAGAAAGCGGGCCGGTACTGCCACACCACTCTGCAGAGACAGCTGGAGTTCAACCACTTTGTTCCACTCGAATGGGCCATCAATGCTGCCACGTTGTCACAGTATTACATCACTAAGTCCTGTTACATGGAAGGCCGGCACTGCTTAGCGGCTGCCCTGGTCGTTGCTGGTCTTGCAGGGGAAGTTCCTTCAGAAGCTGCTGCTCAGGAGAGTGAGACGGAAAGCGAGAAGCGTGAGCAGCTCCGTCAGAAGAGAGCAGAAATCGCCAGGTGCTGGATCAAATATTGCCTGAATCTTCTGCAAGATGCCAAAAAACTTCTAGAGGACAACATCGGTGAGCTGGACGTGGAACGGCAGGTGGAGCAGAAAGCACGACGGAGGgaacaggaggaggagaaggagaaaggcTTGAAGAGTGCCATTCTATTTGGTTCCAGCGACACATATGATTCGATTTTGGCGCTGGAAGAGAAGGTGAGCTGCATCTACCCTCTAGATTTTGAGGAAGCCCGAGCCATCTTCTTGGTGGGGCAGAACTACGTCAACGAGGCCAAGGAATACTTTGAGATGGACGGCCACGTCACGGATCACATCGAGGTGCTCCAAGACCACAGCGCCCTGTTCAAGGCCCTGTCGTTCTTCGAGGAGGACTGCGAGAGGCGCTGCAAGATGCACAAGCGCCGCATCGACATGCTGGAGCCCATCTGCCTAGACCTCAACGCGCAGTACTACCTCCTCATCTGCCGGCAGCTTCAGTTCGAGCTGGCCGAGACCTATTACGAGATGATGGATCTGAAGCTGGTGGTGGCCAACAAGCAGGACGAACTGGACGCGCACACCATCAAGAAGTTCAACCACCTCTGCATGTCCTCCATCAAGTACTACAAGATGTTCCTGGACTCCGTCAAGACGCCGGATGGCAAGTTCCCAGACAAGCTGGAAGATGATGTTTTGCGTCCGGCGCTCGTTGCCAAGTTCCGCATCGCCCGTCTATACAGCAGGATCATCTCCCCCGACTCCGGCAAGCAGCTGGAGAACCTCAACAAGTCCCTGGAGTGCTACTGCTTTGTGGTGGAGTATTGCGAGCGCAACCCCGAGGCCAAGAAGGCGGTGGAGACGGAGCTGGAGCTTAGCGAAGAGATGTCCGGCCTCCTCCCTCTCAAAATCGAGcgcctgaaaatgaaaatggtttcCTCGAACTGATTGACCGACTTCTGAACaatgaaaaattaatacatgaataaaaagcCTTCTATACCTTCTGTCATGTACATTTCCCCCCCCTGTAACACTAACTTAAAATATTGTTGTAGTCCTTTGAATGCTGAAGGAAACTAGCAGCAGATTTGGTTGTCACTGGCACAAATGGATTTATACAATGAAATATAACTTAATTGGAGGGCTCTTGTCTAgccttgtttaatttatttgctgattttaaaaatgtatgttttgtttacaaatggtaaattaggcctatattttaaagtaaaatgatttGTGACTCCATGGGTTTCTGATAGTATTCCACAGTAAATATACCTTGAATGTGCTTCTGCCAATGGTTGTCCTTACCTGCCTTTatctgctgtttatttatgcTCTTCTGAATGCTTACTATTAATAtagtgttcatttaaaaaaataattaaatatcaataaaaactaTAACTTGGGTGAGA

Function

GO:

id name namespace
GO:0048484 enteric nervous system development biological_process
GO:0021952 central nervous system projection neuron axonogenesis biological_process
GO:0000226 microtubule cytoskeleton organization biological_process
GO:0048929 efferent axon development in posterior lateral line nerve biological_process
GO:0006839 mitochondrial transport biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
K23845 KIFBP; KIF-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003086 True 2427 mRNA 0.50 7 10963206 10967428

Neighbor

gene id symbol gene type direction distance location
AMCG00003084 NA coding upstream 1713 10959979 ~ 10961493 (+)
AMCG00003072 LOC108414772 coding upstream 21622 10922596 ~ 10941584 (+)
AMCG00003074 NA coding upstream 45162 10915617 ~ 10918044 (+)
AMCG00003073 NA coding upstream 55496 10900815 ~ 10907710 (+)
AMCG00003077 NA coding upstream 81376 10866639 ~ 10881830 (+)
AMCG00003082 NA coding downstream 6061 10973489 ~ 10982163 (+)
AMCG00003083 vps26a,LOC107676600 coding downstream 18698 10986126 ~ 10994512 (+)
AMCG00003087 supv3l1,LOC106589826,LOC102775654,LOC104944967 coding downstream 27877 10995305 ~ 11002093 (+)
AMCG00003088 hkdc1,LOC103047009,LOC106612435,LOC107743550 coding downstream 36535 11003963 ~ 11015125 (+)
AMCG00003085 hk1,LOC107676584,LOC107666459 coding downstream 51614 11019042 ~ 11039328 (+)
G140436 NA non-coding upstream 306215 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 330717 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 335324 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 673271 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 711681 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 240078 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 277828 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 513377 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 520802 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 570219 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 206366 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 279594 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1109753 9844776 ~ 9853453 (+)
G140189 NA other upstream 1182754 9778250 ~ 9780452 (+)
G140030 NA other upstream 1632742 9325488 ~ 9330464 (+)
G140613 NA other downstream 242145 11209573 ~ 11212111 (+)
G140693 NA other downstream 518763 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1404571 12371999 ~ 12678159 (+)
G140939 NA other downstream 1763303 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1911257 12878685 ~ 12882998 (+)

Expression


Co-expression Network