AMCG00003089 (tacr2,LOC107666460)


Basic Information

Item Value
gene id AMCG00003089
gene name tacr2,LOC107666460
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11040337 ~ 11047762 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003089
ATGGAGACAACTTCGGCACATCTCTCTTCCCCAACCCTGAACGCATCCCTAAACGACGAGTATGAAGGCAACGACACCGGGACCAATGTCTTCGCCCAGCCGGCCTGGCAGGTCGCACTGTGGGCGATCGCCTATTCCCTGATCGTGATAGTGTCCGTCATCGGTAACATCACGGTCATCTGGATTATTCTGGCGCACAAGAGGATGAGGACAGTGACGAACTATTTCATTGTGAACCTGGCTTTCTCGGACGCGGCCATGGCAGCTTTCAACACCGTCTTTAACTTCGTGTACGCCTTGCACAACGACTGGTACTTCGGTCTGGGCTACTGCAGGTTCCAAAACTTCTTCCCCATCACAGCCATGTTTTCCAGCATCTACTCCATGACCGCTATTGCCGTGGACAGGTACATGGCTATTATCCATCCTCTAAAACCCAGACTATCTGCTACCACCACAAAGGTTGTCATTGCTGTCATATGGATAGTGGCCTTTGCATTGACATTCCCACAGTGCTTCTACTCCAAAATTCTCCCCTATAACTCTCGGACCGTGTGCTTGGTTGACTGGCCTGGCGACTATGGGGGGAAACATCAGCTCACGTACCAGATCGCTGTGATAATCCTGATCTACCTGCTGCCACTTCTGGTGATGCTGGTGACCTACAGTATCGTAGGACTGACCCTGTGGGGCAGCGAGATCCCCGGGGAAGCCTCCGAACACTACCAGAACCAGATGCAAGCCAAGCGCAAGgtTGTGAAGATGATGATTGTCGTGGTGTTGACCTTTGCGTTGTGTTGGCTTCCCTACCATTTGTACTTCATCTTGGGAAGCTTCAACAATGACATctacaaacagaaatacatccAGCAAGTCTACCTTGTTATCTTTTGGCTGGCTATGAGCTCCACAATGTACAACCCTATCATCTATTGCTGCCTAAACCAAagATTCCGATCTGGCTTCCGCAGGGCGTTCCGCTGGTGCCCCTTCATAAAGATATCCGAGGATGACGAGCTGGAGTTACGGCACGCCCGGACCTTCAGGATGACCCGGAGCTACCGGACCGACACGACCACTGTAGTGACCCAGAACTCCACTGACCAGGAGGAGACCACCGACAAGCTAATCAAAGCCTAA

Function

symbol description
tacr2 Predicted to enable substance K receptor activity. Predicted to be involved in positive regulation of flagellated sperm motility. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane and sperm midpiece. Human ortholog(s) of this gene implicated in asthma. Orthologous to human TACR2 (tachykinin receptor 2).

NR:

description
PREDICTED: neuromedin-K receptor-like

GO:

id name namespace
GO:0007217 tachykinin receptor signaling pathway biological_process
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004995 tachykinin receptor activity molecular_function

KEGG:

id description
K04224 TACR3; tachykinin receptor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003089 True 1140 mRNA 0.52 5 11040337 11047762

Neighbor

gene id symbol gene type direction distance location
AMCG00003079 NA coding downstream 83936 10954588 ~ 10956401 (-)
AMCG00003081 NA coding downstream 88900 10945019 ~ 10951437 (-)
AMCG00003078 NA coding downstream 116759 10919149 ~ 10923578 (-)
AMCG00003080 NA coding downstream 127756 10907992 ~ 10912581 (-)
AMCG00003071 LOC106591176,LOC103370034,LOC106591308,LOC103383202 coding downstream 232604 10794054 ~ 10807733 (-)
AMCG00003106 hnrnph3,LOC108438202 coding upstream 90435 11138197 ~ 11166902 (-)
AMCG00003097 NA coding upstream 122778 11170540 ~ 11175031 (-)
AMCG00003104 ccar1,LOC107708455,LOC107747452,LOC107582549 coding upstream 159711 11207473 ~ 11224433 (-)
AMCG00003099 LOC107089835 coding upstream 177473 11225235 ~ 11230377 (-)
AMCG00003098 if4e,eif4e1c,LOC108444323,LOC107690176,LOC107582514,LOC103032634 coding upstream 193009 11240771 ~ 11251621 (-)
G140567 NA non-coding downstream 3026 11011138 ~ 11037311 (-)
G140546 NA non-coding downstream 72735 10965532 ~ 10967602 (-)
G140537 NA non-coding downstream 110365 10926118 ~ 10929972 (-)
G140521 NA non-coding downstream 221178 10818769 ~ 10819159 (-)
G140458 NA non-coding downstream 383340 10653325 ~ 10656997 (-)
G140588 NA non-coding upstream 59634 11107396 ~ 11107604 (-)
G140648 NA non-coding upstream 185906 11233668 ~ 11308389 (-)
G140704 NA non-coding upstream 284667 11332429 ~ 11333684 (-)
G140742 NA non-coding upstream 550296 11598058 ~ 11599956 (-)
G140756 NA non-coding upstream 577663 11625425 ~ 11626381 (-)
AMCG00003049 NA other downstream 708965 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1433021 9596943 ~ 9607316 (-)
G140015 NA other downstream 1802607 9236658 ~ 9237730 (-)
G140006 NA other downstream 2192497 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2545741 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 560701 11608463 ~ 11622649 (-)
G140758 NA other upstream 593054 11640816 ~ 11647619 (-)
G140757 NA other upstream 646244 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1680476 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1803259 12851021 ~ 12855341 (-)

Expression


Co-expression Network