AMCG00003090


Basic Information

Item Value
gene id AMCG00003090
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11146588 ~ 11154101 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003090
CCGGGACGCCGTACAGTGGACATGTTGAGTGTGGGCGCAGGATGTGGTACACTCACTGGAAacaacatttatgtatttgggACATTTCATaccatCCCGGCCACAGTTGCGCAGCGGCGGCTTCAATGGAGCTCCCCGTGTTCACAGTGGACTCGTTCTCCAGCGGCCCGTTCAGCGGCAACCCGGCGGCCGTGTGTCTGCTGCACAGTGAATTACAGGACGATCTTTATCAGAAAATTGCAGCCGAAATGAACCTGTCCGAGACTGCTTTCATCCGGAAGTTGAATCCTACAGATGACTTTCACTCAGGGGCTCGTTTTGGGCTGCGCTGGTTCACACCCGCCACTGAGGTGCCCCTGTGCGGACATGCGACACTGGCCTCGGCCGCGGTGCTGTTCACTGTGACAAaaaatTCAAACCAAACACTCACTTTTGAGACCTTAAGTGGAGCGCTCCGAGCACGCCTAGACGGGGATTACATTGTGATGGACCTGCCCATTAATAAGCCCATAGCCCAGgacCCAAAGGAAGTGAAAGAACTGATAAAAGCAGCAGTGGGCGAGTTGACGGTCCAGGATGTGCTTTACTGCGGGTCACTAAAGAAGATCATTGTACGGCTTAGTGACACCTATGAAAGGCATGTGCTCGAGTCCCTGAAGGTGGACCCCCAGTCTCTGATGCGGTGTGAGACCACTGGGAAAGTGAAATCCCTGGTCGTTACCCTGAAAGGCAACCCCGCAGGTCAGCCTGCGTACGACTTCTACTCAAGAAATTTTGCTCCTTGGTATGGGGTTCCTGAAGACCCAGTGACAGGCTCATCACACACTGTTCTCGGCAGCTACTGGGCAGAGAAACTTGGCAAACTGAAGATGCTAGCTTTCCAATGTTCTGCACGCGGAGGGGAGCTGAAAGTGTCATTGAGGGAGGACGGGAGAGTGGATGTGGCCGGTCGAGCAGTCATCGTTCTCCAGGGGAACCTCAGACTTTGAAGCCTGTGTAGGCCAGTATATCCAGGAGTCCTGCGCAAATTAAAATGCCTTTCAGATGTATATGCAGTGCTTtacatg

Function

GO:

id name namespace
GO:0030145 manganese ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003090 True 1067 mRNA 0.53 10 11146588 11154101

Neighbor

gene id symbol gene type direction distance location
AMCG00003091 rufy2,LOC107725492,LOC107743555 coding upstream 6762 11118965 ~ 11139826 (+)
AMCG00003092 NA coding upstream 41235 11052987 ~ 11105353 (+)
AMCG00003085 hk1,LOC107676584,LOC107666459 coding upstream 107260 11019042 ~ 11039328 (+)
AMCG00003088 hkdc1,LOC103047009,LOC106612435,LOC107743550 coding upstream 131463 11003963 ~ 11015125 (+)
AMCG00003087 supv3l1,LOC106589826,LOC102775654,LOC104944967 coding upstream 144495 10995305 ~ 11002093 (+)
AMCG00003096 NA coding downstream 79347 11233448 ~ 11239304 (+)
AMCG00003094 slc25a16 coding downstream 146216 11300317 ~ 11307482 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding downstream 155589 11309690 ~ 11331126 (+)
AMCG00003095 NA coding downstream 177284 11331385 ~ 11356730 (+)
AMCG00003108 NA coding downstream 348926 11503027 ~ 11504004 (+)
G140436 NA non-coding upstream 489597 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 514099 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 518706 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 856653 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 895063 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 53405 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 91155 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 326704 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 334129 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 383546 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 389748 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 462976 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1293135 9844776 ~ 9853453 (+)
G140189 NA other upstream 1366136 9778250 ~ 9780452 (+)
G140030 NA other upstream 1816124 9325488 ~ 9330464 (+)
G140613 NA other downstream 55472 11209573 ~ 11212111 (+)
G140693 NA other downstream 332090 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1217898 12371999 ~ 12678159 (+)
G140939 NA other downstream 1576630 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1724584 12878685 ~ 12882998 (+)

Expression


Co-expression Network