AMCG00003092


Basic Information

Item Value
gene id AMCG00003092
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11052987 ~ 11105353 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003092
ATGGCCGGCGATGTGCGGTACTGCGAGCGGTGCTCCTACATCTTCCTGAAGTTCACCCTCATCGTGTACTCGACGGTCTTCTGGGTGAGTTGTGTGTCTGACAGCTTGGTGACCCCAGTGCGGGGCTTTGCGCGCTTCCTGACTGTCCGCCCCGCTGCCGGCCAGGGCGTGTCCCGCAGCCTGGTCGGGGGATTCATCCTTGCCATTGGCATCTATGCAGAGGTGGAGAGGCAACGGTACAAAACCCTGGACGGTGTGTTCCTGGCCCCGGCTATCATCCTCATTGTGCTGGGATTGGTCATGTTTGTGGTTTCCTTTATCGGAGTCCTAGCTTCACTGCGTGACAACCTGTGCCTCCTGAAGGTGACAGTTGACTTGTTGAATAAGAACATCAAAAAAGGAATTGTGAATTACTACGATGACCTGGATTTCAAGAACATCATGGATTTTGTCCAGAGAAAGttCCAGTGTTGCGGTGGGCAGGAATTCACAGACTGGAAGGTAAACATGTACCATAACTGCTCGGCCCCTGGACCGCTGGCGTGCGGCGTGCCTTACACCTGCTGTGTCGGAACCAAGCGCCTTGAATTATTGGACGTTATCTATGTGCGGGGCTGCACAGATGCTGTCTTCATCTGGTTGATGGACAACTATAAGACTATGGCAGGACTTTTGTTTGGTATTCTGCTACCACAGTTCTTCGGTGTGATCATCAGCTGGCTGTACATCACACGGGTGGAGGATGCCATCGCGGAGTGTGGGTACACCAGAGACGTCCTGATCCAGGACTCGCACAGGAACGTCAAGCCCCAGAGCAGGATGGCGGCCTGCTGCAGGTGTCTGCCCGACCTTGACTGA

Function

GO: NA

KEGG:

id description
K17297 TSPAN15; tetraspanin-15

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003092 True 858 mRNA 0.54 6 11052987 11105353

Neighbor

gene id symbol gene type direction distance location
AMCG00003085 hk1,LOC107676584,LOC107666459 coding upstream 13659 11019042 ~ 11039328 (+)
AMCG00003088 hkdc1,LOC103047009,LOC106612435,LOC107743550 coding upstream 37862 11003963 ~ 11015125 (+)
AMCG00003087 supv3l1,LOC106589826,LOC102775654,LOC104944967 coding upstream 50894 10995305 ~ 11002093 (+)
AMCG00003083 vps26a,LOC107676600 coding upstream 58475 10986126 ~ 10994512 (+)
AMCG00003082 NA coding upstream 70824 10973489 ~ 10982163 (+)
AMCG00003091 rufy2,LOC107725492,LOC107743555 coding downstream 13612 11118965 ~ 11139826 (+)
AMCG00003090 NA coding downstream 41235 11146588 ~ 11154101 (+)
AMCG00003096 NA coding downstream 128095 11233448 ~ 11239304 (+)
AMCG00003094 slc25a16 coding downstream 194964 11300317 ~ 11307482 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding downstream 204337 11309690 ~ 11331126 (+)
G140436 NA non-coding upstream 395996 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 420498 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 425105 10624763 ~ 10627882 (+)
G140351 NA non-coding upstream 763052 10288437 ~ 10289935 (+)
G140340 ubtd1b,LOC106578996 non-coding upstream 801462 10247835 ~ 10251525 (+)
G140612 NA non-coding downstream 102153 11207506 ~ 11209502 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding downstream 139903 11245256 ~ 11247278 (+)
G140692 NA non-coding downstream 375452 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 382877 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 432294 11537647 ~ 11537954 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 296147 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 369375 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1199534 9844776 ~ 9853453 (+)
G140189 NA other upstream 1272535 9778250 ~ 9780452 (+)
G140030 NA other upstream 1722523 9325488 ~ 9330464 (+)
G140613 NA other downstream 104220 11209573 ~ 11212111 (+)
G140693 NA other downstream 380838 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1266646 12371999 ~ 12678159 (+)
G140939 NA other downstream 1625378 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1773332 12878685 ~ 12882998 (+)

Expression


Co-expression Network