AMCG00003095


Basic Information

Item Value
gene id AMCG00003095
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11331385 ~ 11356730 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003095
ATGGAAGtTACACTGACATCTgctggaggggaaaaaaataacacttgtCAACCTGTAGGTGACTCGGTGTTCCATGAGATATACTGCTACGATCTCTACATCCCTTCTGGTAATGAACCTCGAAgtaaaaaacaggaagaaattGACGATCGGATAGAGAAAGAAATTGTCAAACCACTAGAAGAGAGAGGATACAAGTGTTACCATGGCTGCCGGGACTACACTGGAGGAGGGGTATATATGCAAGCCTTCACTGAACCTCTCAGAGTCATCCCAGTTACAATTCTTCCAGTTTACCAGGACCCGTGGTTCTCCAGAATGAAAAGCTGGTTCATGCAAAGCAACATACTGCGTAGAACGGTTCTCCTGTTATTTGAACCCATTGATCACAAATCACCCTTCTTAAAGACCTGCTTCAGTCTGAATGCAATAGACTCTGAAATGGCAGTATTGCTGCCAAAGCTTTGTGAAACAATAGAGAAAGAGAAGGCCAAGTTCCCCCTGGAGAAACGTCTGCAACTGGCTAAAGGAGAAAGAGATTCAGATTCTTCACTCTGCACAGTTTATGATTTGCCCGACCGTCgGGACGTATATTATAATGGGTCTGTTCTTCCTGtagagacaaaagaaaatatcttCCAAAGGATTAAGCAGGCTGCCTCTAAGAATCAAGATGATGTTTTGTGGGCGGCAGCtactgaaaatgaagatgaaaaaataagaaaggaagCCACCTCTGCTCTGGCCAGAGTCTTGAAGAGAAACCTCATCAAATTTAGCAAACAAAGGGATTTGAAAGATTTGGAACAGGATGTCCAGAAACTTATTCTAAGAGAGACCTCTGCTGACCCAGAGCTGTTGTACAGGCAGCAAGAGTTACACTGCTACATCCTGGCAGCTTTCTTCTTAAACACCTGCATCTCCAAAAACCTAGACATACCAGAAAAGATGGTATCTCCTCGTCGGGCATGGAAGCGGTTCTCATTTgccagaaaaaagaaaaccttcagCTCACTCTGCCAAAGGTTCTACCAGAAATTCCGAGGAGCCCTTTATGCCAACCTAGAGAGTGCCCAACAGAGTACCAGCAGTATTGTGCAGAATTGCATCAGCCTTCTGGAGAAAGTTCCTCGACTGTTTGAAGAGATGGATTCGGTTGCGTGCCGAGATCTGCTGGTCCAAGACTTCCAACGGAACATGAAGAAGCTACCTTGGGCAATCAGGAATATTTTCCTAGTGATCATCACTGAAAAGGCACTTTGTCAAGACAGTGAGAACGATTTTGTGGCGAAACTCTGGAAAGCCAATCCCCGTGGTCCTTTGCCTTTTTACGCACTCGAGGACCATCAGCCCCTGCTCAGACTCCTGCATGACAATGAAAACCATCTCCATTTATCAAACATGTTGGAAATCTTCCTTTCGGTGGCCAAAGCCGTACACTACTGCCATGACCGCAAACTCCTTCTGAGAGACATAACCCCGGCGAGTTTCACTGGATCAATGAGAACTGGGAACCTGGCGCCACAGCTCGTTGTCAAGCTCTCAAGCTTCCTCATGGCACGAAGTGACACGAAGGAAGCCCTGGCTGTCCGTTTCAGTGCGCCGGTGTCTCTGAAAAAACACGAATTCTCCTTTGGCTCAGATACATGGATGGTTGCCATAACATACTTCTCTGTCCTGTCATATGGAAGGCAGCCCTATTTGGAGTTAGACCACATGAACACACAGGATGTCATAAGCGAGGGCTATTTGGATGATGATGgGATTTATGTTCCAGAGAAAACAGATGAACCTCAGAAAACTGACTTGTGTGCTGACATGATCACAAAGGGCTTTAATCTGAAAGAGGTGGTCTCTGTAAGAATGAGCCTTGAGACCAGGAAAGCCCTTCTGAGTTTATCAGGACCCAGTTTCCTGTGCATAGACGATATCTCATACAGTTATTCTACTACTCTGAGTTCAGAGCCTCTGGTGAACTTCCATTTCACCCTCCTTGACATTGCTGCCATGGAGAGCGTGGAGCTGCAGGAGCGGCTGGACTACTTGCAACAGATCGCTCAAGCACTGAGGAACCTCCATGACCTGTCAATCATTCACTGCGACGTGAGGGCCTGTAACATGTTCGTCTTCCAACAACAGATCCAGATTACCAATGATGTCCAACACAAGGGAATATATGTTGTTCGGTTCTGAATCCAGCACATCCGATGAAATTGATTACAACTTCGAGGAAAATATTTATGAGAATATATTGGAGTATGAGGATGTCATAACTTAAGAGAAGAGACTCTCCTTTCTAACAATCATGCAAGAATATAAGAGTTGCAGATTAACCAATGAGGGGCACTTTTACTGTTCCTGGCACCCTGAGCAGCCAGTCTTAATCAaatttgcatgtgtgtggtCTCCAGAGACTGCagtcatattatttttataactgtgtCAAATTAAGACTTTGCACCCTAACACACTGATAATGGGTCAAAGATCTGTATATGCGGCCTATAAAATGAACCTaactaaataaaacttaaaaatactattaaattCTGAAACCTATAAATTGTTACAAAGAGATCaaataacttaatattttaAGCCAGCAGTGTTACTAGACTATACATCAGTATTATTAGTCATAATTTGATTTGCTTGTAAGCTTGTATGGTATTATGACTGTTTCAAAGCATGTTtgaaaccaataaaataataatgttcttgAAGATCAGAGTTCAAAACCAAATTGCCACCAAGACAACcaaccaaa

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003095 True 2767 mRNA 0.43 13 11331385 11356730

Neighbor

gene id symbol gene type direction distance location
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding upstream 259 11309690 ~ 11331126 (+)
AMCG00003094 slc25a16 coding upstream 23903 11300317 ~ 11307482 (+)
AMCG00003096 NA coding upstream 92081 11233448 ~ 11239304 (+)
AMCG00003090 NA coding upstream 177284 11146588 ~ 11154101 (+)
AMCG00003091 rufy2,LOC107725492,LOC107743555 coding upstream 191559 11118965 ~ 11139826 (+)
AMCG00003108 NA coding downstream 146297 11503027 ~ 11504004 (+)
AMCG00003109 NA coding downstream 189671 11546401 ~ 11548788 (+)
AMCG00003107 NA coding downstream 215135 11571865 ~ 11600042 (+)
AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding downstream 429692 11786422 ~ 11797059 (+)
AMCG00003112 LOC106576680 coding downstream 446281 11803011 ~ 11806356 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 84107 11245256 ~ 11247278 (+)
G140612 NA non-coding upstream 121883 11207506 ~ 11209502 (+)
G140436 NA non-coding upstream 674394 10653333 ~ 10656991 (+)
G140435 loxl4,LOC103368016 non-coding upstream 698896 10632263 ~ 10632489 (+)
G140434 NA non-coding upstream 703503 10624763 ~ 10627882 (+)
G140692 NA non-coding downstream 124075 11480805 ~ 11481037 (+)
G140694 NA non-coding downstream 131500 11488230 ~ 11490662 (+)
G140723 NA non-coding downstream 180917 11537647 ~ 11537954 (+)
G140738 NA non-coding downstream 275233 11631963 ~ 11633525 (+)
G140857 NA non-coding downstream 798083 12154813 ~ 12158751 (+)
G140613 NA other upstream 119274 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 574545 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 647773 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1477932 9844776 ~ 9853453 (+)
G140189 NA other upstream 1550933 9778250 ~ 9780452 (+)
G140693 NA other downstream 129461 11486191 ~ 11487884 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 1015269 12371999 ~ 12678159 (+)
G140939 NA other downstream 1374001 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1521955 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1749726 13106456 ~ 13110634 (+)

Expression


Co-expression Network