AMCG00003098 (if4e,eif4e1c,LOC108444323,LOC107690176,LOC107582514,LOC103032634)


Basic Information

Item Value
gene id AMCG00003098
gene name if4e,eif4e1c,LOC108444323,LOC107690176,LOC107582514,LOC103032634
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11240771 ~ 11251621 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003098
TCGCACTTCAGTAAACGCTTTGCTGGCGTACGGACAGTGTGTGTTAAATCCTACTACAACAAGATTGACCTCAGCGAGCTCCCGTAGTCGTCGTGCGAATGGATGTGTGACGCACCAGCGCCGAGCGGACAGGAGCATTTTTACAGGCAAGATGGCGACGTCGGAGCCGCGTGCAACTGATCCTGAAGAACCTTCTGTGGAGATTTCCGCACCTGAAGTCACCAGCACAGAGCAGTATGTAAAACACCCCCTGCAAAACAGaTGGGCCCTTTGGTATTtcaaaaatgacaaaagcaaGAGTTGGACAGAAAATCTGCGTCTCATTGCCAAATTTGATACAGTCGAGGACTTTTGGGCGTTATACAATCACATACAGCAACCTAGTAAGCTTGGATTTGGATGCGACTATTGTTTATTTAAGGATGGAATAAAACCAATGTGGGAAGATGACCGAAATAAACTGGGAGGCAGGTGGTTAATGACACTTGGCAAACAGCAGAGACATAATGACTTGGACCGGTACTGGATGGAGACGcTATTGTGCTTAATCGGCGAGTCTTTTGATGAAGCCAGTGAAGATGTCTGCGGTGCCGTCGTCAATGTTAGACCAAAAGGGGACAAACTAGCCATCTGGACAGGAAACTGCCAAAATAGGGAAGCCATCATGACAATAGGGCAACAATACAAAGAGCGTTTGAATGTTCCCATTAAAGCCCTAATCGGCTACCAGTCACATGACGACACCTCTAGCAAAAGCGGATCCACAACAAAGAACATGTATACAGTTTGAAGAAAACTTGGGTTAAATTTGCTGTAGGTTTATACAATTATCCATCTTCATCATGATATTAATACTTTGAGTTGTCAACTACTGTAGTGTCCttttttaacatgtttgtatatgtacaaTAATTCATTACCTTCACGATAAATTTACTGGCAGTATTTTTCAATACTAATTGAGCAATCAAGCAAATGTCTAAACCGATGGAATTAGCAGTGCGTTTGAATGGAACTAAAAGTgtatattaaactttttttttttaacgtgtATTACTAATATGTAGTTACACTAAAGAGGTTGTGAAGTTTAAATAAAACTCTTGCTTTTCTGGATCTCTAAGAATGCTGCTGCAATGTTCTAAAATGTTCCTcaaaaatagaataattaagGCATTTCCATGTTACTTTAGTAGACCGtttagaacattttaatatcctTTGTGGTAAACAGTGTTGAAAAATAAGTATTGAGAACTAAGCCTGCAGACTTAAATTTAATATCTATGACATGTTTCTGGAAGTTAGCTGTGACTTTCACGCTGGAATAGAAACTCAAAGAAAAGCGTCAAATTTCGGCCAAGCTGAAATCGCACTCTTGCTTGTAGAACTATATATTTTGAACTATGATTTCCAACATTATTTATGGTATAAGCATTGCTGTGGAACTTATTAGTTTGAGGACTGCAGTCCttagttttgatttgttaaCAAAAGCAATGTGGACTACTGCTTATATGATAGAGATGTTTTATACAGTACATGCCTGGACACATGCTTTTTAAGAGTGCTTTTCaccatttaattcaaattgacATTGCTTGGTTACACACTACTTCTGGGTTAATGCAAAAGTGAATTCATTGTGAATTATTTTGCTCTTAATGTATCTATTTTGATTCTGTAATTCCAGGATGTATATTAAATTCTTTAAAGGTTAATTGCTTTGCAAAAATATTCATATCGGCTTCATCATATTGTATTTGactgtattcatttttcttctttgttagTCACATTGTAAAGGTTCACTTATCTGCACCAAATGGctatgttgcttttattttaagggTACATGAGGCCATTGTGTTGTTTCATCTCTAGTTGTCTTTTTCTTAATCTGAATAAGAACACACATGGTCAATTTGTCATATTTATTGATATCCAACAAAGAATCCACAAACTAtctggattaaaaacaaattctggttttattttagcttaagatttttctcattaaaatatcaTGCTGTACTGTAACATTTCAGTGGATTTAAGTTAAGGCCTGTCACTATCTCTAGCTACTCTGTATGCCCAAGTTTTTCTGGATCTGAATTCCATTGTTTCATTTTCCTTCCAACTTGTGCCTTCAGAATCGCCTTACTTGTATTTATACACAGTTATCCCATTGTCTGCCTGTCCTGGTAACTCTCGTGCATAGCTGAGGAACAAACTGCTGCCTGTGATTTGATCTGTTGTAGTGACTGTACTAGTGATATCATGCAAATCGGACATTTCATCGTTTTACAGTGAAAGTCTGAATAGCTTTTTGGGAGTCTAGACGTTAACCGGAGATTGAGTTTTACCAGTAATCCTAATTTGTGTAGAGGTTTTCAAATTTAagtgcaaagtttattttacagGGTTGTCCCAATAGTTGTTAGATCAATAAACTATTCTGATTAGCGTGCCTTCTAGAAATTGGTAACGATTCAGGATTGTTTGAAAAGGCATATCCACCATTCCTCACCATCCAGAATATTCCAATTAAGTTCCATACGTTTTTGGCAGCTGGATGTAACCcacttttttaaaatctctAACAATGCTTAATTATCTAGCTTTATATGACGAAGTAACAACTAATCGGTTCTGGTTATTCTAATACACCCCATAAACTGCAGGTGCATTCCATGGTAACTGGTGATGTAAGCAGGTGTGGTTTACATGGTGAGTTTCTGTATGACCATTTGGGATTGCTTTCTTTGCAAACAGGATTTTGAAGCTAggtttgttgtgtatgtgtgtggtaaAGGTGAAGCAGAACTAAGTCCTTAACTGCAATTTCTGCCATTGCTAGGTAGTTAAACTGTCCTGATGATTACACATCTAAAAGGCACTCCTTCCGGATATATTACTTTTACAGTAACTCCATCCACAGtgtgaacaaacaaaatgcacagctgCCTAGAGTAAACAAATGTTACCGGGTCAAATTCCATTTCTGTAACCATTTCACACCATCTGCTACTGTACATGTGTGCACCAATGTCTGACACTTTCCCCGCTATACTGAAATGGGTAAACTACCCACCTTTTTATTTCATCATAGAAAAACACTGAggtagtttaattttaaataaactaaagtgATTACTATAATTACTGTCACTGTACTATTATCAGCATGTAAaactaattaatataaatataatatatatatagctagaGATATATATCAACCCACTCAAAATGATATCCAAGTTTAGATATTAAATACCTCTTTAGTATGCCTTTTGGaaaaatggggggtggggggaataaaaacatgGTTATAAATCCTGGATTTCTGCTTTTTCATCAATGTTTTGACTGGTTTGAGACCACCAAATACATCCCAATTCTCAGACAATTTTAGGctctctttcttttaaaaacagagaggaCCAAGATGAttctcttgttttaaattattggattataccaggggttcccaaaccagTCATGGAGGACCCCCTGTGTGTTTCTGACTGacataattgcttaattgattagttaattgaactaacaattatataattgagcattatattgcattaagtgctcagctggaacaaaaccagCATGGCAAGGGGTCCTCAAGGACTAGTTTGGGAACCCTTGGATTATACAGTGTGTTGATTGTCATGTcttatttattctgtaataCAGATTTAAGCTGCtcacaagttttaaaataacaaagatgTTTGTTTCCATGAAAAACCTAAGAACTAAACAATTGGTATGAACCTGTCTGTCTTGTTTGACTTGAACTGTTCATAAACTCATCCATGTATTAGGTATTGTTCTCTGCAGAGGACTAAAATGAAGGGTAGAACACCGATTTATCACCACACCCTTTAAAAGGTGCACCCAAGCACATCCACTGAAAAggactgttttaaattaaaataaaatgggcaAAGATCAAGTCTTTAACA

Function

symbol description
eif4e1c Predicted to enable RNA 7-methylguanosine cap binding activity and translation initiation factor activity. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 4F complex. Human ortholog(s) of this gene implicated in autistic disorder. Orthologous to human EIF4E (eukaryotic translation initiation factor 4E) and EIF4E1B (eukaryotic translation initiation factor 4E family member 1B).

NR:

description
PREDICTED: eukaryotic translation initiation factor 4E-like isoform X2

GO:

id name namespace
GO:0006413 translational initiation biological_process
GO:0005737 cytoplasm cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K03259 EIF4E; translation initiation factor 4E

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003098 True 3983 mRNA 0.37 7 11240771 11251621

Neighbor

gene id symbol gene type direction distance location
AMCG00003099 LOC107089835 coding downstream 10394 11225235 ~ 11230377 (-)
AMCG00003104 ccar1,LOC107708455,LOC107747452,LOC107582549 coding downstream 16338 11207473 ~ 11224433 (-)
AMCG00003097 NA coding downstream 65740 11170540 ~ 11175031 (-)
AMCG00003106 hnrnph3,LOC108438202 coding downstream 73869 11138197 ~ 11166902 (-)
AMCG00003089 tacr2,LOC107666460 coding downstream 193009 11040337 ~ 11047762 (-)
AMCG00003100 NA coding upstream 1862 11253483 ~ 11272674 (-)
AMCG00003102 march8 coding upstream 108806 11360427 ~ 11374048 (-)
AMCG00003101 NA coding upstream 187744 11439365 ~ 11455653 (-)
AMCG00003103 fam21c coding upstream 204619 11456240 ~ 11478384 (-)
AMCG00003105 hells coding upstream 300070 11551691 ~ 11562305 (-)
G140588 NA non-coding downstream 133167 11107396 ~ 11107604 (-)
G140567 NA non-coding downstream 203460 11011138 ~ 11037311 (-)
G140546 NA non-coding downstream 273169 10965532 ~ 10967602 (-)
G140537 NA non-coding downstream 310799 10926118 ~ 10929972 (-)
G140521 NA non-coding downstream 421612 10818769 ~ 10819159 (-)
G140704 NA non-coding upstream 80808 11332429 ~ 11333684 (-)
G140742 NA non-coding upstream 346437 11598058 ~ 11599956 (-)
G140756 NA non-coding upstream 373804 11625425 ~ 11626381 (-)
G140764 NA non-coding upstream 534793 11786414 ~ 11789926 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding upstream 544355 11795976 ~ 11797014 (-)
AMCG00003049 NA other downstream 909399 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1633455 9596943 ~ 9607316 (-)
G140015 NA other downstream 2003041 9236658 ~ 9237730 (-)
G140006 NA other downstream 2392931 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 2746175 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 356842 11608463 ~ 11622649 (-)
G140758 NA other upstream 389195 11640816 ~ 11647619 (-)
G140757 NA other upstream 442385 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1476617 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1599400 12851021 ~ 12855341 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01180000_05471249_05477850 IF4E, EIF4E1C coding CI01180000 null 5470828 ~ 5477850 (-)