AMCG00003105 (hells)


Basic Information

Item Value
gene id AMCG00003105
gene name hells
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11551691 ~ 11562305 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003105
ATGAGCAGCACCGAGGACGCCATGAGGAGCGATTCTCCTCAATGCCCCAAACCCAACGAGCCAGAAGAGCCCCAGGGCACCGCTGTGGAGCAGGCTGGCCCGGGCAGAGAAAGCCCCACCGAGAATATGGCAGGTGCTTTGGGAGCAGAAAGCATCATTACACAGGAAATGCTGGATGAGGAGAAAAAGCTGATGGCAGaaggggagaaggaggagaaagagatgTTGGAAAAGGCACGTGCGTCCTGGGAGCGGGAGTCCAATGAGATGCGCTACAAGAGACTGCAGCACCTGCTGGAGAAGAGCAATGTCTACTCCAAGTTCCTGCTCACAAAGatggagcagcagcagctagAGgaaaaaaagagaaaagagaagctgGAAAAGAAGAGGGCAGCTCTTTTGTCCAAAGAAAAGATCTTGAATTACTGGATGTCTCCTTTAGTTGAACGAAGGAAACGGGGAAGAGAGGAAGAATATAAAATTGCGGACATCATGTCGAAAGAGGATATTTTGTCAAAGGCGAAAAGACCTAAAGTTGAGGTGAAGGACGAACCGATGTCTCCATCCAAGAAGTGGGAGGCAGAAGACATAGAGAAGATGAGTGATTCGAACTCGGACATTAAGAGCCGCCTCTCGCAGACGGAGAGGGAGAATGTGCAGCACATGTTTGATCCATTGAGAACGGTCAACGGGAAACCGGTGCCCTACCAGCAGCCCAAGTACTTCACTGGGGGCATCATGAGGTGGTACCAAGTGGAGGGCATGGAGTGGCTTAGCATGCTGTGGGAAAATGGGATTAATGGCATCCTGGCTGATGAGATGGGCCTGGGGAAGACAATCCAGTGCATAGCAACCATCTCCATGATGGTGGAGAGAGGGGTCCCCGGACCTTACCTGGTGGTGGGGCCCCTGTCCACACTACCCAACTGGGTCGCCGAGTTCAAGCGCTTCACACCTGAAATCAGTGTATTGCTATATCACGGACCCCAGAAAGAAAGGCATGAACTTGTCAAGAAGATTCGCAAGCGCCATGGTTCAATTCAGATGCACCCTGTTGTCATCACATCCTTTGACATTGCTATGAGAGACCGAAAATTCCTGCAGAATTGCCACTGGAAGTATCTGATAGTTGATGAAGGGCACAGGATCAAGAACATGAAGTGCCGCCTGGTTCAGGAGCTGAAGCTCTTCCACTCTGAGAATAAGCTGCTCCTCACAGGGACCCCACTTCAGAACAACCTGTCCGAGCTCTGGTCTCTGCTCAACTTCCTGCTGCCTGATGTCTTTGACGACCTGAAAAGctTTGAGTCCTGGTTTGATTTAAGCAGCATTAGTTCTGATGCAGAAAACATTGTACATAAAGAACGGGAGCAGAATATATTGCACATGCTTCATCAGATCCTCACACCATTTTTGCTCAGGCGGTTAAAGACTGATGTCACTCTAGAAGTCCCTCCGAAGCGAGAGGTCATTGTCTATGCTCCTCTCACCTCCAAACAAGAGTTTTTATACACTGCCATCGTCAACAAAACCATACGGCAGGTGCTGGGGCAAAAAGAGGTCAACACTGCTCCAGTACAGCTGACACCCTCTGGCAGGCCAAAGCGCAGGAGCAGGCGTGCAGTGAACTACAGCGAGTTGGTTGACCGCTCTGATGATCTGGAGAAACTTGCCCAACAACTGAAGAAAGAGGAGGCTGAGCAACTGCAGATACCAGTGAGCGATGTGCAAATGCCAGCGGATGTTGAGATCCATGTGCAGATGAATAGTGCCCTGATGATCTTGAGGAGATGCTGTAACCACCCGTACCTAATAGAGTATCCCCTGGACCCTGTCACTCAGGGCTTTAAGATTGATGAACAGCTGGTAGAATCATCTGGGAAATTTTTAGTATTGGATCGAATGCTCCCAGAACTGAAGAAAAGAGGCCACAAGGTGCTGATTTTTAGTCAGATGACCTCCATTTTGGATATCATTATGGACTACTGTTACCTAAGAGATTACAAATACAGCCGCCTGGATGGATCAATGTCCTACACAGAGCGAGAAGACAATATGAACAAATTCATCTCTAACCCCGAGGTCTTCCTCTTCCTGCTGAGCACTCGTGCGGGGGGGCTGGGAATTAACCTGACCTCTGCTGACACAGTCATCATCTTTGACAGTGACTGGAATCCTCAGGCTGACCTCCAGGCCCAGGACAGATGTCATCGTATTGGACAGACCAAGCCAGTAGTTGTGTATCGTTTAGTTACTGCCAACACGATTGACCAGAAGATCGTAGAGAGAGCTTCTGCCAAGAGGAAACTGGAGAAGATGGTCATCCATAAAAATAAATTCAAAGGAGGGAAGGCAGGACTAAACCAATCTAAAAGCTGCCTGGATCCACAAGAGCTTATGGATCTGCTAAAATCCAGAGATTTTGAGAGAGAAGTAAAAGGCACTGGTCGAAAAGTCATCAGTGACAGAGACTTGAAAGCCCTGTTGGATCGCAGTGACCTGCTAGCCCTGATGAAAAGCAATATGAAGCAGGAAGAAGAAGGAGTTTTCAAAGTGATTGAAAATGATGAACAAGATTCTGCTGAAATTCGCCTGACGTGA

Function

symbol description
hells Predicted to enable ATPase, acting on DNA and DNA binding activity. Acts upstream of or within regulation of DNA methylation. Predicted to be active in nucleus. Is expressed in several structures, including alar plate midbrain region; central nervous system; immature eye; margin; and pectoral fin musculature. Human ortholog(s) of this gene implicated in immunodeficiency-centromeric instability-facial anomalies syndrome 4. Orthologous to human HELLS (helicase, lymphoid specific).

NR:

description
Hells protein, partial

GO:

id name namespace
GO:0045132 meiotic chromosome segregation biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K19001 HELLS, DDM1; ATP-dependent DNA helicase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003105 True 2604 mRNA 0.49 22 11551691 11562305

Neighbor

gene id symbol gene type direction distance location
AMCG00003103 fam21c coding downstream 73307 11456240 ~ 11478384 (-)
AMCG00003101 NA coding downstream 96038 11439365 ~ 11455653 (-)
AMCG00003102 march8 coding downstream 177643 11360427 ~ 11374048 (-)
AMCG00003100 NA coding downstream 279017 11253483 ~ 11272674 (-)
AMCG00003098 if4e,eif4e1c,LOC108444323,LOC107690176,LOC107582514,LOC103032634 coding downstream 300070 11240771 ~ 11251621 (-)
AMCG00003114 gbf1 coding upstream 237350 11799655 ~ 11802872 (-)
AMCG00003113 NA coding upstream 245605 11807910 ~ 11821314 (-)
AMCG00003118 NA coding upstream 370161 11932466 ~ 11935399 (-)
AMCG00003117 hspa12a,LOC107583519,LOC107663288 coding upstream 375412 11937717 ~ 11962072 (-)
AMCG00003119 NA coding upstream 447311 12009616 ~ 12051093 (-)
G140704 NA non-coding downstream 218007 11332429 ~ 11333684 (-)
G140648 NA non-coding downstream 243302 11233668 ~ 11308389 (-)
G140588 NA non-coding downstream 444087 11107396 ~ 11107604 (-)
G140567 NA non-coding downstream 514380 11011138 ~ 11037311 (-)
G140546 NA non-coding downstream 584089 10965532 ~ 10967602 (-)
G140742 NA non-coding upstream 35753 11598058 ~ 11599956 (-)
G140756 NA non-coding upstream 63120 11625425 ~ 11626381 (-)
G140764 NA non-coding upstream 224109 11786414 ~ 11789926 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding upstream 233671 11795976 ~ 11797014 (-)
G140883 NA non-coding upstream 795141 12357446 ~ 12362204 (-)
AMCG00003049 NA other downstream 1220319 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 1944375 9596943 ~ 9607316 (-)
G140015 NA other downstream 2313961 9236658 ~ 9237730 (-)
G140006 NA other downstream 2703851 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 3057095 8485361 ~ 8494596 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other upstream 46158 11608463 ~ 11622649 (-)
G140758 NA other upstream 78511 11640816 ~ 11647619 (-)
G140757 NA other upstream 131701 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1165933 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1288716 12851021 ~ 12855341 (-)

Expression


Co-expression Network