AMCG00003107


Basic Information

Item Value
gene id AMCG00003107
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11571865 ~ 11600042 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003107
ATACAACAGCCTGTGAAAGCGTGGAGCCCTTGCTACAGAGTACTCACTCTCCTCTGGCAGCAGAGTAGGAGGACACAGAATGAGGGAGGCAAGCTGAACAGCTGTGATTGGAGCAAAggaaacaacacagaaacagcACCCTGTGGAACCTGCACTGAGAGAGGCTGTGAGGGAACAATATTGCAGGATTTGTGCCATGCCAATTTGAGTATTTCTctgaagaggaaaagaaaatgaagaacgCCATCCATTTAGATGCTAGGATGTCACACTGCTGCTAAGGGGCAGTTCATTCCCTGACACCAATTCCAGCAAGTGCCGAGGCTCAGGTCTCAAGCAGTACATCCATGAGCCAGAGAAGCCGGAGAGCCAGCATGGTGTTCAGCTGGCACAAGCCCTTCACCATCCTCACGCCGTGGAGGAGAGGAAAGGCGGAAACGGCAGTGGAGAGTGAAGTGGTGTTGACCAAGATGAAGATCTTCAACAACTTCCAGGGAAAGTTTGTGAATGTTGAAAATGCCTCCCCCAGAAACTCTGTCTCAGAGCAGGACATCCAGGAGCCAGCCAAACCTTTTGTCAGCAATGAAGCCCCATCGACGCCAGAGCAAGCCCATCCCAACCTGGACTACCTGTCTCAGCTTTCTGACCTCACAGTGCAGGACCCCGACCTGCCCAGACTATTCAAGTTTGAATCGGAGGACTCTGGCGTAGAGCTGCCTAGTGGAGCAAATTCCCCCTCCACCCCAACAGGGTCCGAACAGAGCTTTGTGGTGCACAGCCGAGGGTCATCTTGTGACTCGTCTTGTGGGGTCCTGAACATGGCAGCTCAAGATCATCTTCTCTCGCTCAGCCAGTGCCCAGAGACAGAAGAGACGGACACCAGTACCCAGCAGACACCAGAGGAGCAGGTCTCAGCCGAAAACAAAGACGAGCTGAGCTCTGAAAGTGCCACACCGGACTTTAGCCAGTCTCAAGAAGAAGAGGACTCAGAGATTGAGCAGTCAGGAAACCTAGAAAAGGTCTCTGAGGAAGGTGAAGTGAATTCTACACTGGAAGTTACTGCTGAGGTTCCCATCCAAGATACCAGGCCAAGGAGCAGCAGCTTCACGGAGGCCTATGATGACATGACGGAAGTGGAGATTCAGGAGCAGCCGCTGCAGAAATATAACACGAGCGACAGTCTGGATGAATACATGGATGAATGCTGCAGGTTAAGTGAGgtGAACCAGGGAAAGGTGAATGCTCTAGGCTCAGGACTGGGATACCTGGAACACATCTGCCAGCTCATCGAAAAGATCGGACAACTCCAGGAGCACAACCTCAAGCTCCAAAAGCAAATATGTGGCCTGCAGAAGGAATCCCgaataaagcaaacaaaggaGGACTGTTTCCTGCAGCACTGTTCCTGTGGAGCAGCCAGCTTGGCGTTTCAGGAGCTGAAAAGACACTCCAGGAGTGAGTTCCACAACCTGACTGCCTCCAATGGCACACTGTCAGACCTGTCAACCATTCCTGAAATAGCAAGGCGCCCCGACAGGCTGGGAAGGAAAGGGGTGGAGGGTCATGGAGAAGCAGGAAGCCATCCCCTGGTGCCTCTCCTGAGGAAAGGCCTGAACCGCAGAAGCTACACAGAGGGTGAGGGGAGGTATCTTTGCGACAGCATGGAGGGTCTAGCCGCACCATTCAGACGGAATGAAAATCACCCCTGGGGGAGAGTAAAGGAACTGGTAAAGAAGACCAGGCTGAGAAATCAGAGCAGACTGGGGTTATCATCCAGTGCACTGAAGAGATCGTGCCCCCAGCTGTACAGGCCAGACCTGGGCTCATCTGAACCaccaagaagagacagaaactCCATGATTGCACTGGGCCACAACACAAAGTATGACTACCTCTGGCCCCACTAGTGTCTTAcagACACCAGAGAGATGGCTCAGAAAGCAGAAAAGACTATTCAGTCTGAGATGGAGATGTAGAGGAAGCTAAAAGgaagagaagaaggaaaagagaagatgacaagaaaagaaggataaaattaaaataagttcaATGCAAAGACAAGAATTATAAGGCACCATGCTCAAATAGAGTTGAGAATGGGTTGATTGGGTGCGCTGCATGCGTATTTgtggatgtttttcttttccttgggTTTGGAGTGTCCGATATACAGGTAAACAGACTTTTGAATTTCTTTCAGATACATTATCTGCTACATATtccatgtatgtgtatatatatatatatatatatatatatatatacacatacacatatcaTCACTATTAACATGTGtcgatgaaggcctccccaagatgtttccaccaTTATGatgatattaaatatacatacatacatatcttaaggcaatgcatttattttgctttttatatttcaataacccATGTAACACCGTTTTCAgctacattttcagtgtttaactGTAATCTACAACCTCTCCTTATTATTTGAAACACAGCTTTCTTCACTTGTTTCATATACTTTTACTTTGATATCCTACTTTCTAATGAGAGAGTGTTTTCCACCACTTTATTAGACATTCATTCCCCTGAAACTAGGCCTACTGTGTGGTTTAGTTTACTTTGTTTAAAGTTTCAGCTTTCATCTTCAAAACACCTTGTAGCTGTTGATCAGTTGACAAGTGAGGGTCTGTCCCCTTCTTAAAGACATGTAGTATGCATCTATATTAATATTGTccttaaaaaaatctaactcCAATGACACGTTGCTGTGATTATAGATGTAAAGTTCACTAACTCAAAGACTGTtagcaaaacaaagaacaaaaatctTACTCGCCTGCAAAACTTTTTATTCATATCCGACAGGGCAATAAAACAATGCTGGCTGctgttaaagagaaaaaaaaaaaacacataaaattaGCCACAGCAGTAGGTAAGTCAACTAAATCAGCATATGTTTTGAACAAGACTGAAACTAGCAGAAACCTGAAGCCCTTTTAATTGGAAAATTGGGAGTGGAGACCAGACTCTGACCAGCATTTGAAAGCCACAAATCATTCTGGGAGATAGCCCTGGACACCATCAGTAATGTCTTACACCTTGGCGAGTGCTAGCTGTGCACTTATTATTGTTCTGAAAAGACTCTCTCTTACATTCTTGCACTGCATGATGAGTCCTTGTGAGTGTGGTAAGGGTGAGATggcaatacaattatatactcACAGGCCCAAATACTAGTACTAATCaatgtctgtgaaaccagccataaACATTTACCAAAAAGACCAGctttaaagaaaagaacacaTACCTGCTCTAGGCTCCGTGAAAACTACTGGAGCACTCTGGATGCTGTTAACCCATCATAATGTAGGATCTTGCTTTAACatctgtgcaaaataaaataaaaatgcttaatGAAAATTGACTTATTATTTGGGATCTACTAATATGTGTCAGTTTTAATTCTAGTATAACTATGGGACCGTAAAGTTCTGTTTTGCCTCTAACATATTGATAACATATGTTTATCTTAACATATTActcttctaaaaatattttcacttgGGTATTTTTATCGAACAGCTGGGACTTTgtgaaagtttattttatagaCAGTATCTCCAACAAAACCTTGTTTATTAGCACTACCAGGGATGTTATGGAAGAATGAGTTTTTTATGTACTgaccacattgttttttttattaatgtacatttaatataatacattgtatattttaacataaatattacaaatggaTTTCTATTTATAGTTTCCTATGAACTGTACTTTATATTGCTcatttatatgaaaaacaataaagtaaaaagtgaTATTTTTCAATTGCTTGCTGAATTATTTCTTCATGTCTTTATGTTTTCGCTGCTGATCTGGTGAATTTGCGTACTCGTAAAGCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003107 True 3908 mRNA 0.43 8 11571865 11600042

Neighbor

gene id symbol gene type direction distance location
AMCG00003109 NA coding upstream 23077 11546401 ~ 11548788 (+)
AMCG00003108 NA coding upstream 67861 11503027 ~ 11504004 (+)
AMCG00003095 NA coding upstream 215135 11331385 ~ 11356730 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding upstream 240739 11309690 ~ 11331126 (+)
AMCG00003094 slc25a16 coding upstream 264383 11300317 ~ 11307482 (+)
AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding downstream 186380 11786422 ~ 11797059 (+)
AMCG00003112 LOC106576680 coding downstream 202969 11803011 ~ 11806356 (+)
AMCG00003115 pitx3,LOC103027456,LOC100136798,LOC107699310 coding downstream 297918 11897960 ~ 11911506 (+)
AMCG00003116 NA coding downstream 324285 11924327 ~ 11930101 (+)
AMCG00003122 NA coding downstream 401992 12002034 ~ 12012016 (+)
G140723 NA non-coding upstream 33911 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 81203 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 90828 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 324587 11245256 ~ 11247278 (+)
G140612 NA non-coding upstream 362363 11207506 ~ 11209502 (+)
G140738 NA non-coding downstream 31921 11631963 ~ 11633525 (+)
G140857 NA non-coding downstream 554771 12154813 ~ 12158751 (+)
G140872 NA non-coding downstream 686005 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 1221833 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 1511695 13111737 ~ 13111936 (+)
G140693 NA other upstream 83981 11486191 ~ 11487884 (+)
G140613 NA other upstream 359754 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 815025 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 888253 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1718412 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 771957 12371999 ~ 12678159 (+)
G140939 NA other downstream 1130689 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1278643 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1506414 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 2124868 13724910 ~ 13743543 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_006428 NA non-coding NC_007124.7 CM002897.2 8168713 ~ 8230165 (-)