AMCG00003108


Basic Information

Item Value
gene id AMCG00003108
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11503027 ~ 11504004 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003108
ATGATTGTGGGGCTTGTGGGCAATGTGGGTTTGATATGCGTAATAGCCAGGCAGAAAGAAAAGGCCAATGTCACCAGTATACTCATTGCCAACCTGTCATTCTCAGACATCATGGTATGTGCGTTCTGTTTACCCTTCACGTTGGTCTACACCATCATGGACTACTGGATTTTTGGGGAGGTTCTCTGTAAGATGATGCCATTTGTGCAGTGCATGTCGGTGACTGTCTCCATCCTTTCCCTGGTCCTAATTGCCTTGGAGAGACACCAGCTCATTATTAACCCTGCAGGATGGAAACCCTCAGTGCCTCAGGCATACCTGGCTGTAGTCATCATATGGATGCTGGCTTGTTTTATTTCGTTGCCGTTCTTGGCCTTCCACATTCTGACAGAAGAGCCCTACAGTGATCTTTCCTTCTTCATGGCCTCCTTGGCAGACAAGGCCATCTGCACAGAGAACTGGCCTTCCCACCAGCACAAGCTCATCTACACCACGTGGTTGCTGATCTTCCAGTACTGCATCCCTTTGATCTTTGTCCTGGTGTGCTACATAAGGATCTACGCCCGCCTGTGTAAGCGCAAGGACATGCTGGACAGGACCTGCGAGGACAACCAGAGAATGACTCACAGCAGGAGAATAAACGTCATGCTGATATCTCTGGTTTCTGCCTTTGCCATCTGTTGGTTGCCCCTCAACACCTTCAACACCGTGGCCGACTGGAACTCTGAGGCTGTCGAACACTGCCACCACAACCTCATCTTCTCCCTCTGTCACTTGGTTGCCATGTCCTCTACTTGTGTGAACCCCATCATCTATGGCTTCCTGAACAACAATTTcaagaaggaggtgaaatcgGTGGTGCTTCATTGCAAGTGCGGCCCTCTTGAGGATGACTATGAGCACTTTCCCCTGTCCACCATGAACACGGAGGTCTCCAAGACTTCACTTCGCCTGAGCTGTAGGAATAACTCTGTGTAG

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004983 neuropeptide Y receptor activity molecular_function

KEGG:

id description
K04206 NPY4R; neuropeptide Y receptor type 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003108 True 978 mRNA 0.50 1 11503027 11504004

Neighbor

gene id symbol gene type direction distance location
AMCG00003095 NA coding upstream 146297 11331385 ~ 11356730 (+)
AMCG00003093 alox5,alox5a,lox5,LOC107678516,LOC107589586,LOC107747471,LOC107708393,LOC107582511 coding upstream 171901 11309690 ~ 11331126 (+)
AMCG00003094 slc25a16 coding upstream 195545 11300317 ~ 11307482 (+)
AMCG00003096 NA coding upstream 263723 11233448 ~ 11239304 (+)
AMCG00003090 NA coding upstream 348926 11146588 ~ 11154101 (+)
AMCG00003109 NA coding downstream 42397 11546401 ~ 11548788 (+)
AMCG00003107 NA coding downstream 67861 11571865 ~ 11600042 (+)
AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding downstream 282418 11786422 ~ 11797059 (+)
AMCG00003112 LOC106576680 coding downstream 299007 11803011 ~ 11806356 (+)
AMCG00003115 pitx3,LOC103027456,LOC100136798,LOC107699310 coding downstream 393956 11897960 ~ 11911506 (+)
G140694 NA non-coding upstream 12365 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 21990 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 255749 11245256 ~ 11247278 (+)
G140612 NA non-coding upstream 293525 11207506 ~ 11209502 (+)
G140436 NA non-coding upstream 846036 10653333 ~ 10656991 (+)
G140723 NA non-coding downstream 33643 11537647 ~ 11537954 (+)
G140738 NA non-coding downstream 127959 11631963 ~ 11633525 (+)
G140857 NA non-coding downstream 650809 12154813 ~ 12158751 (+)
G140872 NA non-coding downstream 782043 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 1317871 12821875 ~ 12831106 (+)
G140693 NA other upstream 15143 11486191 ~ 11487884 (+)
G140613 NA other upstream 290916 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 746187 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 819415 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1649574 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 867995 12371999 ~ 12678159 (+)
G140939 NA other downstream 1226727 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1374681 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1602452 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 2220906 13724910 ~ 13743543 (+)

Expression


Co-expression Network