AMCG00003110 (LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882)


Basic Information

Item Value
gene id AMCG00003110
gene name LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11608463 ~ 11622649 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003110
ATGGTGGCGAATCACCAGCAGGCCATGGGCAACGGTTCAATCAGAGCCCCTCGGCTGGAGGAGAGCTGCCTGGCCTCCGGGTTCAAAGAACCACCAGCGTGGGAGGTGATTGAGGCCCTGAAGGCCAAGATAGTACgactggaggaggagctgggcatGCGTGACAAGGAGCTGGAGGCCAGAGCGAAGCGGCTCGGTGCCCTAGAGAAGGAGCTACAGGCAAAAGTGTCCCAGATAGACAAGCTACAAGATGCCATTGGCTACAATAGTGCTGCACAGTCCACGGCCCAGGTCAGCCCAGGTGAGCGCCTCCTGAGTGTCATCAATGAGGGGCCCACACGCTTCCACAGGGTGGCCGTGGAAGTTCACCGCCGCCTCAGGGCCAAGGAGGGAGTGTCAGCTGAACCAACCTCCCGACACTACTACAACCACACTGTCCAGAAGCCCTCTTTTGGCAGGGACCGGGTCCATAAGGATTCAAGCACCAAAAAGCTGATAAATGAAGCTATCATGAACAATGACTTCTTGAAGAAGCTGGAGCCACAGCAGATGAGAGAAATGGTGGAGTGTATGTATGAGAAGACCTACAATGAGTGCCAGGTGGTCATCCAAGAAGGGGAGCCTGGAAATTACCTTTATGTGCTAGCAGATGGCTTGCTGGAGGTTATACAGAATTGCAGGCTTCTTGGACAAATGCACCCTGGAACAGCATTTGGTGAGCTGGCCATACTGTACAACTGCAAGAGGACAGCCACAGTCAAAGCGGTCTCCCAGTCACAGATCTGGGTCCTCGACCGGCAGATGTTTCAGAATATCATGATGAGGACGGCACAGGCGAGACACGAGGAGTACTTCAGCTTTCTATGCAGTGTATCTTTATTGAAAGACTTGCCTGAAGAAAAGCTTGCAAAAATTGTGGACTGTCTGGAAGTGGATTATTTTGATAAAGGAGATTACATCATTcgtgaaggagaagaaggaaacACGTTCTTCATCATAGCGAAAGGAGAGGTGAGTGTCACACAGACCATGGAGGGATCATTGGAGCCCCAGGAGATAAAAACTCTAGGGGTGGGAGACTATTTTGGAGAAAAAGCCCTGATAAGTGAAGATGTTCGCTCAGCAAACATCATCGCCAAGGAGAATGATACCCAGTGCCTGGTGGTGGACAGAGACACATTTAACCAGATGGTGGGGACTTATGAAGAGCTACAAGCATACCTGAAACAGTATGTGAAGCAGCTCTCAATCAGTGACGAGAAGAGGAATGCTATCCCCCAGTCTCCTCTCATTGATACCACTCCTGAAGGCAGTGAGCTTACCAGGGTTAAGGAGAAGATGGCTCGTATCTCCACCAACTCACCCTTCAAGCACCTGCAGATTGTCACCACGCTGGGCATGGGCGGCTTCGGCCGAGTCGAGCTGGTGAAGATGAAAGATGAAGATATAACGTTTGCCCTGAAGTGcatcaagaagaagcacattgtGGACACTCGACAACAGGAGCACATCTACTCTGAGAAGAACATCCTGCAACAGACTAACTCACCGTTCATTGTCAGGTTGTTCAGAACTTTTCGGGACAACAAGTATGTGTACATGCTGTTGGAAGTGTGTCTGGGAGGGGAGCTGTGGAGTATTTTGCGGGACATAGTATCTGATGGAAAGTTGCATTGTAGGAGTTTCTTTGAAGAGCCCACTGCACGGTTCTGCACTGGCTGTGTCCTGGAAGCCTTTGACTATCTGCATGGCCGGGGAATAGTCTATCGGGACTTAAAACCAGAGAACCTGCTGCTTGATGAACAAGGATATGTGAAAATGGCTGATTTTGGATTCGCAAAGAGGATTGGCTTGGGAAAGAAGACATGGACTTTCTGTGGCACCCCGGAGTATGTAGCTCCAGAGGTCATTATGAATAAGGGACATGACTTTGGAGCTGACTGCTGGTCTCTGGGCATCCTCATCTTTGAGCTGCTCACTGGAAGCCCCCCGTTTTCAGGGTCAGACCCCATTAAGATCTACACTATGGTGCTACAGGGGATAGAGAAGGTGGACGTCCCCAAGCGTATTGGCAAGCGGCCTGAGGATCTGATTAGGAGACTCTGCAAGCTAAACCCTGCCGAAAGACTTGGAAACAAGAAAAATGGAATCAACGATATAAAAAAGCACAAGTGTCATTTTTGCAGGTGGTTCCAAGGCTTCAACTGGGAAGGGCTACGAAGAAGAAAGCTATCTTCCCCACTAAAAAGAGAGCTGAAAGGGCCAACGGACCACAGCAACTTTGACATCTTCCCCCCAGAACTAGAGGAACCCCCAGACGAGCTCTCGGGCTGGGACAAAAACTTCTGA
>TU177065
CGAGACACGAGGAGTACTTCAGCTTTCTATGCAGTGTATCTTTATTGAAAGACTTGCCTGAAGAAAAGCTTGCAAAAATTGTGGACTGTCTGGAAGTGGATTATTTTGATAAAGGAGATTACATCATTcgtgaaggagaagaaggaaacACGTTCTTCATCATAGCGAAAGGAGAGGTGAGTGTCACACAGACCATGGAGGGATCATTGGAGCCCCAGGAGATAAAAACTCTAGGGGTGGGAGACTATTTTGGAGAAAAAGCCCTGATAAGGTAAACATATTAA

Function

NR:

description
PREDICTED: cGMP-dependent protein kinase 2-like

GO: NA

KEGG:

id description
K07376 PRKG1; cGMP-dependent protein kinase 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003110 True 2349 mRNA 0.50 18 11608463 11622649
TU177065 False 284 lncRNA 0.42 4 11618789 11619926

Neighbor

gene id symbol gene type direction distance location
AMCG00003105 hells coding downstream 46158 11551691 ~ 11562305 (-)
AMCG00003103 fam21c coding downstream 130079 11456240 ~ 11478384 (-)
AMCG00003101 NA coding downstream 152810 11439365 ~ 11455653 (-)
AMCG00003102 march8 coding downstream 234415 11360427 ~ 11374048 (-)
AMCG00003100 NA coding downstream 335789 11253483 ~ 11272674 (-)
AMCG00003114 gbf1 coding upstream 177006 11799655 ~ 11802872 (-)
AMCG00003113 NA coding upstream 185261 11807910 ~ 11821314 (-)
AMCG00003118 NA coding upstream 309817 11932466 ~ 11935399 (-)
AMCG00003117 hspa12a,LOC107583519,LOC107663288 coding upstream 315068 11937717 ~ 11962072 (-)
AMCG00003119 NA coding upstream 386967 12009616 ~ 12051093 (-)
G140742 NA non-coding downstream 8507 11598058 ~ 11599956 (-)
G140704 NA non-coding downstream 274779 11332429 ~ 11333684 (-)
G140648 NA non-coding downstream 300074 11233668 ~ 11308389 (-)
G140588 NA non-coding downstream 500859 11107396 ~ 11107604 (-)
G140567 NA non-coding downstream 571152 11011138 ~ 11037311 (-)
G140756 NA non-coding upstream 2776 11625425 ~ 11626381 (-)
G140764 NA non-coding upstream 163765 11786414 ~ 11789926 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding upstream 173327 11795976 ~ 11797014 (-)
G140883 NA non-coding upstream 734797 12357446 ~ 12362204 (-)
G140904 NA non-coding upstream 980173 12602822 ~ 12603031 (-)
AMCG00003049 NA other downstream 1277091 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 2001147 9596943 ~ 9607316 (-)
G140015 NA other downstream 2370733 9236658 ~ 9237730 (-)
G140006 NA other downstream 2760623 8847032 ~ 8847840 (-)
G139933 LOC108443181 other downstream 3113867 8485361 ~ 8494596 (-)
G140758 NA other upstream 18167 11640816 ~ 11647619 (-)
G140757 NA other upstream 71357 11694006 ~ 11733762 (-)
AMCG00003138 NA other upstream 1105589 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 1228372 12851021 ~ 12855341 (-)
G141004 NA other upstream 1238777 12861426 ~ 12879421 (-)

Expression


Co-expression Network