AMCG00003112 (LOC106576680)


Basic Information

Item Value
gene id AMCG00003112
gene name LOC106576680
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11803011 ~ 11806356 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003112
GCCCAGTCTGACAGTGAGATTTCCTCCTATCACCCCAGCGAGGTCACTCTGGACCGTGGCTATACCTCAGACTCTGAGGTCTATGCAGAACATGGAAAGCAGTCCAAGATGCATCGCTCTGTCACTGACATAGATGTGGCCAACAGTGGCTGGTTAATGGTTGGGAAAGATGATATTGACATCAGCAAGTCTGTGGCACCAGGGACCAAAGTACAGAGCTCTCCTTTGGTCAACCAGTACAGCCTGACTCTGGGGCAGGACATGGGCCTGCACGACACCAAGTCCCTCATCAAGTGTGTGGAGTCTCTGTCCTTCATTGTCCGAGACGCTGCACATGTCACGCCGGAGAACTTTGAGCTCTGTGTCAAGACTATCCGAGTGTTTGTGGAGGCTGGCCTCAATGGAGGGTACAAGACACACGAAAAGAAATCTAAGAGCCATAAGTACGATTCCAAGTCAAACCGGTTCCGGAAGAAGCCCCGGGAGAAGGACTCCTCTGTGAAGAGGCCCAAGGTGTCCAGCCAGCGCTTCTCACGCTCACACAGTGATGATGAGGAGGACGAAGGGGTTCCTGCCAGCTATCATACGGTGTCTTTACAGGTTAGTCAGGACTTACTTGACCTGATGCACACCCTGCACACACGGGCGGCCAGTATCTACAGCTCCTGGGCAGAGGAGCAACGCAATCTGGAGGCTGTAGGCAAGAAGATTGAGGCTGACTCTCGAACACTGTGGTCCAGCTGCTGGTGTCCTTTACTACAAGGGATTGCCTGGCTCTGCTGTGATGCCCGGCGGCAGGTACGAATGCAAGCTCTGACTTACCTGCAGAGGGCGCTGTTGGTGCATGACCTTCAGACTCTGGATGCTGTGGAGTGGGAGTCCTGCTTTAACAAGGTGCTGTTCCCCTtgctcaccaagctgcttgatAACATCAGCCCTGCGGATGTCGGGGGGATGGAGGAGACCAGGATGAGGGCCTGCACACTGCTGTCC

Function

NR:

description
PREDICTED: Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003112 True 993 mRNA 0.54 6 11803011 11806356

Neighbor

gene id symbol gene type direction distance location
AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding upstream 5952 11786422 ~ 11797059 (+)
AMCG00003107 NA coding upstream 202969 11571865 ~ 11600042 (+)
AMCG00003109 NA coding upstream 254223 11546401 ~ 11548788 (+)
AMCG00003108 NA coding upstream 299007 11503027 ~ 11504004 (+)
AMCG00003095 NA coding upstream 446281 11331385 ~ 11356730 (+)
AMCG00003115 pitx3,LOC103027456,LOC100136798,LOC107699310 coding downstream 91604 11897960 ~ 11911506 (+)
AMCG00003116 NA coding downstream 117971 11924327 ~ 11930101 (+)
AMCG00003122 NA coding downstream 195678 12002034 ~ 12012016 (+)
AMCG00003120 NA coding downstream 315688 12122044 ~ 12130905 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding downstream 327769 12134125 ~ 12153351 (+)
G140738 NA non-coding upstream 169486 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 265057 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 312349 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 321974 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 555733 11245256 ~ 11247278 (+)
G140857 NA non-coding downstream 348457 12154813 ~ 12158751 (+)
G140872 NA non-coding downstream 479691 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 1015519 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 1305381 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 1754242 13560598 ~ 13560839 (+)
G140693 NA other upstream 315127 11486191 ~ 11487884 (+)
G140613 NA other upstream 590900 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1046171 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1119399 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 1949558 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 565643 12371999 ~ 12678159 (+)
G140939 NA other downstream 924375 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 1072329 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1300100 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1918554 13724910 ~ 13743543 (+)

Expression


Co-expression Network