AMCG00003115 (pitx3,LOC103027456,LOC100136798,LOC107699310)


Basic Information

Item Value
gene id AMCG00003115
gene name pitx3,LOC103027456,LOC100136798,LOC107699310
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 11897960 ~ 11911506 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003115
TCCAGAGGCTGACGGCCCCAGTTATGGATTTTAACCTCTTGACGGACAGCGAGGCCCGCAGCCCGGCGCTCTCCCTGTCCGACTCCGGAACCCCTCAACACGATCAAGGATGCAAGGGCCAAGACAACAGCGaTACAGAAAAATCCCATCAAAACCAGACGGACGAATCTAATGCGGAGGACGGGTCCCTGAAGAAGAAGCAGCGCCGGCAACGGACCCACTTCACCagccagcagctgcaggagctggaggccACCTTCCAGAGGAACCGCTACCCCGACATGAGCACCAGGGAGGAGATCGCCGTGTGGACCAACCTCACCGAGGCCAGGGTCCGGGTGTGGTTTAAGAACCGCCGGgccaagtggaggaagagggagcGAAACCAGCAAGCGGAGCTGTGCAAGAATGGCTTCGGGGCTCAGTTCAACGGACTCATGCAGCCCTACGACGACATGTACTCGGGCTACTCCTACAACAACTGGGCCACCAAGAGCCTGGCCACCAGCCCATTGTCAGCCAAAAGCTTCCCCTTCTTCAACTCAATGAACGTCAGCCCCCTTTCCTCGCAGCCCATGTTCTCACCCCCCAGCTCCATCTCCACCATGAACATGGCCTCATCCATGGTGCCCTCGGCGGTGACCGGCGTTCCCGGCTCAGGCCTCAACAACCTCAGCAATCTCAACAACTTGAACAGCCCCACCCTGAACTCGGCCGTGTCTGCCAGCGCCTGCCCCTACGCCACCACAGCCAGCCCCTACATGTACAGAGACACGTGCAACTCCAGCTTGGCCAGCCTCAGACTGAAGGCCAAGCAGCATGCCAACTTTGCCTATCCAGCGGTGCAGAACCCGGTCTCCAACCTGAGCCCTTGCCAGTACGCAGTGGACCGACCCGTATGAAGACACTCCCTAGTGACTGACTCAGAGTTACCCCACAACGAATGACTGGTTCATGACCTTTTAAAAGAAATacctatataaaacataaaataacgtATGCCTTGGGAATCTCTACCGAAATAAGCTtctagaaaaaagaaaaaaaaaaacattttatggtGGACCACTCATACGTTTaaagattttttcttctttttctttttttaacctgaGGAAAACTGACCAACTGTTCGAGGGATTTTGAAAATTTCCAAAATGTCCACATCATTATTTTGACCGCATGGCCAGAAAAATATGCGTTTGGCAATACGATGGGCGCTTTTTGATATCGATGTTGGCGTACAAGCAAACATGCATGGCCGTTACAACCAGTACAATGGGGACCTGTGGTTGTAATATGGGCTAGAGGATGTATATaatggactttttttttgttttgtatgtgaaaTAATTATCTATACAAAGTAGTACTTTTGATGAAAAAAGCATGTTCTTCAAGAGCAGAACCTAGATCAATGTACTATGAGTACATCCTTAGGAATTTTAATCTTTGTTATGAATTCCATTGCCTCAGCAGGTCAAAGGGCACCGTCGACTCAAAGAAGAATGTCATGGGCATTCTCCGAAAACAATTTCACATCTGCCAGAGCAGGAGATTTAGACCTTTGAAACGAAGAGAAAAGCCATTAAATATATTGGGTTGTTTGGTGTCACACAAGAAAGGGAGTCCAttctgaaaaaatgtatgtaagagTGAAGTtgttataaaataacattttccagtGTAGCCTGCTTTGTCTAATTTAAAACGGATACTGTTTATCAATATCACATGtataagaaaatattgtttatgaAGTTGCCAGTTctcttcatgttttaatttcttactgATGACCTCTGAGTGGCATTATACTGATGATAGATATAATCTTGTTACGGATACATTTGACCGATGCTTGGACAGACAACCTCAGTGTACAAAGGCTATCCAGTAATGGTCAAGCAGGTTTGGTCCTGTGCCTTATGTTATCCAGGCCCATGCCAGCATTATGTAAGTTAAACAGTGTGTAACTGGACCTCATGATCAGCTCATTTGAGATCCAGCACACTACACAAGTAAATTCATACTCCAAGCAAATGAAAGCTTTCCTTTACATTTCAAGTGACTGCAAGAACAGCCCTTTAGTCACTCTCACAGCACAACCAAACCTCACATGCATTTCTACAGAAATGTTAATTCTAAAGGTTTtcacaagtatttatttttaagcatttcagTAGCAGATCTCTGTGCCGTTTTGGTGTAGAATACAACATTGAGCTTTGATAAGGTGTAtctcactgtctctgtgtcaCCTACCCATAACCTCAGTGGTATCTGAAAATAGACTTTAAACACCAGGGTCTTTGTTTTTGCCTCAactgacagaaaacacaaagagaaaaacagtttATCTGCATCCCTTCAGTTTGTTAGTGTGGGTTCCTACAATGCTCTGATATGTGTGCTTGAAACAAGGAATGACCAGTGTTTAACTAACATAATGGTGTAACTGAACTGATGAAGACCAAATTatcatatgtataaaaaaaaaagaccaaaggGATATTCCACATTAAGGAGCAAACCAAATTCTCATACAGTGTCGCTATTTCTGTCATTCTAATAAAATTCagctttgttttcatattatatGTCCTCGAGCTTGTTTCAGTTGATA

Function

symbol description
pitx3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within adenohypophysis development; lens fiber cell differentiation; and positive regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including ectoderm; head; immature eye; nervous system; and neurogenic field. Human ortholog(s) of this gene implicated in anterior segment dysgenesis; anterior segment dysgenesis 1; cataract; cataract 11 multiple types; and cataract 9 multiple types. Orthologous to human PITX3 (paired like homeodomain 3).

NR:

description
pituitary homeobox 3

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0045893 positive regulation of transcription, DNA-templated biological_process
GO:0021984 adenohypophysis development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09357 PITX3; paired-like homeodomain transcription factor 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003115 True 2626 mRNA 0.45 3 11897960 11911506

Neighbor

gene id symbol gene type direction distance location
AMCG00003112 LOC106576680 coding upstream 91604 11803011 ~ 11806356 (+)
AMCG00003111 LOC106513751,LOC107375490,LOC103376442,LOC108239168 coding upstream 100901 11786422 ~ 11797059 (+)
AMCG00003107 NA coding upstream 297918 11571865 ~ 11600042 (+)
AMCG00003109 NA coding upstream 349172 11546401 ~ 11548788 (+)
AMCG00003108 NA coding upstream 393956 11503027 ~ 11504004 (+)
AMCG00003116 NA coding downstream 12821 11924327 ~ 11930101 (+)
AMCG00003122 NA coding downstream 90528 12002034 ~ 12012016 (+)
AMCG00003120 NA coding downstream 210538 12122044 ~ 12130905 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding downstream 222619 12134125 ~ 12153351 (+)
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding downstream 323051 12234557 ~ 12239380 (+)
G140738 NA non-coding upstream 264435 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 360006 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 407298 11488230 ~ 11490662 (+)
G140692 NA non-coding upstream 416923 11480805 ~ 11481037 (+)
G140632 eif4e1c,LOC108444323,LOC103032634,LOC107708453,LOC107690176 non-coding upstream 650682 11245256 ~ 11247278 (+)
G140857 NA non-coding downstream 243307 12154813 ~ 12158751 (+)
G140872 NA non-coding downstream 374541 12286047 ~ 12286276 (+)
G140961 NA non-coding downstream 910369 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 1200231 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 1649092 13560598 ~ 13560839 (+)
G140693 NA other upstream 410076 11486191 ~ 11487884 (+)
G140613 NA other upstream 685849 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1141120 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1214348 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 2044507 9844776 ~ 9853453 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other downstream 460493 12371999 ~ 12678159 (+)
G140939 NA other downstream 819225 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 967179 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 1194950 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1813404 13724910 ~ 13743543 (+)

Expression


Co-expression Network