AMCG00003119


Basic Information

Item Value
gene id AMCG00003119
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12009616 ~ 12051093 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003119
TGCTGGTGCTACACCGCAGAAACCAGGCGTGCTGACGTCATCAGGGAACGCAAGGTGCGCGGCTCAGGTGACCGCACTTTTCACTTCCTGGTAGCTCTGCTGATGTCCCGGGACAGAAAACCCCTACACGGCTCTGAAATGGCGAATGTGgaagaaataaagcaaatggAGATTATTACACATCTATCAAATAGAGCTATAAATGAGTATGAAGGACTCCAAAAACAACACGAGAAAACCAAACTAGAGaatgaAAGCATAAAAAAAGAGCGGGATGAGGCTGTGAAGAAATTGAAAGAGTTTCAGAGACTTTCCCACATGGTGATCGAGGAAGTCAGTGTCATTCAGGAGCATCTGGACATTGAGAAATCCTGCAGAGCCAGTGCCGAAGCTCTGGCAACTAAGAGGAAGAGCATGTTGTACCTGTCTCGCCTGGGGCCGGAGGTGATCACTGAGATCAGCCTTGAAGATGAGGATGCGGCTATGGAGAGTGAGGAGAGCCCAGCCATGTGCTCCTCTACTCACTGCCAACATCAGATCAAAGAACTACAAAGTAGACTAGACTCGacactggaagaaaaaaaaagaatagcaaATGACCTGGAGGTCTTAAGAGAGAGGCTCGGGGAAGTCACAGAGGAACTGCTTAAAGAACGacaggaaaacattgttttgattGGCGAGACAGTTCAGCAAAAGAAGCTCTTGTCAAAATATAACAGAGTGTCGCTGCTTGCAGTGGAGGAATATGAAGAGCTACAGGGCAACCTGGAGCTTGAGAAGGACCTTCGCCAAGAAGCGGAAAACTTTGCAAGAGAGATGCTAGTGGAGCAGAAGAAGCTGAGCAGACAGAGCCACATCCTGCTGCAGAACATCTCCCCTGCGGAGCAGCTGCTGGGCGCCCTGGAGGACGTGTCCCGACTGACCCAGGCCCTGGAGACGGAGAGGTTGGAGCACCAGCAGCAGATGAAGGCGGTTCAGGAGCAGCTCCAGGGCTCAACGCTGCAGAAGGAGGTGGTGGTTCTGCAGCACAAAGCGGAGTTGCTGGATGAGGAGAAGAAGGAATGGGAGAGCAAGTGCCACAGGGCCGAGCAGCAGACCAAGGACCTCAAACACACAGTGGAGGAGCTACAAAAGCAGCTACGGCTTGCTGTCAATCCAGTTCCTGCTCaggccccccccccaccgccgcccccgccccccccaccgcccccaccaccaccatcatcatcttCCAACCCTCTCAGGTTGCCAGACTCTGCGCAAAAGGAAACTGGAGAGGAAGTGCCAGACGTGAGGCAGCAGGCTGTGGAGGAAATGATGGAGAGAATTAAGAAGGGTGTTCACCTGAGACCTGTGAACCAGGTGGCCAGAAGGAACCGAGCCGCACACAATGAAAGGAATCCATCAAGTTCTGCTGTCCAGGAGCTGAAGGGGATTCTGAACACATTCAAGAGCCCCTCTCCATCACGGCACATCGCTGTGCCTGGAATGGAGTGCACCGAGACTGAGCTGGAGAGAGCGTTGCAGAGACGGAGGTGTGCTTTTAAGCTGATGGAGCAAAACTGTTCACAGTCGACACCGAGCGTGTTCCCCAGCAGCGTCTCTGACATCGTTAGACTGAAGAAGATCCAGCCGAAGCCAGAGCCCAGCGTGGAGGAGCAGCCAGAGCCGcctggacacacagacactgccgCCAGCAACGCCCCGCAGCCCCCggacACACAGAGTGGAACCTCGATACATACTGAAGAGAGGCCAACTGAAGATCGAAACAAGAAAAACGGAGAAGTAACAAGTCATGAAAACGGCACTGAATCAAGTAGCACCtgctgattaaaataatatgcacaCAGAATGTGTTATATCCAGAGTCTGAGGCAGTGCAGCAGTGTTTCGAGGTACAATACACAACATTAACACAACATTGTGACCAATGGAGTCCAGCGGGACTTGTTTGTATCCTGTTGGATTTATTTCAACCACATTTTGAGGGAGATTTATTTGGcctacattaaaatgcaaagagaGAGGGGATAATTACTCTCTGCATTTACAGTTACATAGAAAAAACTTTATTgagatgtatacatttttttttatccaattttattaacagatattatttttgtttataatgatTTTTTCAGCTTTGATGTCTTCTGCATTGtgccaaaaatacaaatacaagtacTACTCTTTTGACCACAGTTATATAATTACAAGTTAGatcaatttgaaatgtacagGTGTAGGAATTGTAATGTCCATAAGCATGAATGGAGTATACAGTGGCCTCCACATGTATTCATACCCTTGATAGattgtaacaaaataattgaacagACGAAAAACTattgtacaatttttttttttttttccaaataatacTAACACTGCAGTTTGTTTGTCAGAGGCAGATGCTTTGCCCAGGAAAAGTTATAGTTTAGATGTTATCGCCTTGTGAACCTGAAGGAGAGGCAGACACCAACTCCCACCCAAACAGTGCATAACCGCAAGCAGCTCTAGTTCAAAGTATCAAACTGAATTTGCTGAATTGAGTTAAAAGTAATGTAgcaattaaactgtaattgCTTTGTCACGAACCTATTTGGAAAATGactgaaacaaataattaactACTGATGTGTGTTAGTACATTTATTGCATGTTATTTTgtggaaatggagaaaaaatattttccaaatagGAATGAAATCTGTATAATTGATAATTACATCTGCAgctttgaatgaaaaaaataacttattgtGATGCATTATTTTGGGCTGGGGAAGTGCTTTTGGAGATGTCTCTTGTGTCTTGTTCAAGTGCAGGGAATTCATGTTCTTCTGTAGAACCTGTAAAGATGATTAAAACATCTTCATGAGCAGTAACGGCACGGGGCATTTACCTGCATACGTACTGCCAGCATCACATTTGGTATTTGGGATTGTTTTAGTGTTTACACTTGAGAGGAGACGAGGGAAAGCAGTGATTAGTGCCAGATTTATCATTCTAGTTAGCTTTTCATTAggatattaattaatgagtttaaaaaaaatacagaatagaAAGTACATAATACCCCAGCagctttttgttgttatttaagatttaaaaatataaaatataaaatatatatatatatatatatatatatatatcattttgttAGAAAGATGAACTCATTGTTCAATAATGGTGCAATGTCCTTGTATTTTAGGTGTAATTAGGTTCCCAATTAACGGAACCAATGTACATTTTGCCAGATCCTTTCCTTATGATTCCTGACACAGAGTTTCTTTTATAAACCCAAAGAAATACATTCTCACCAGCTGAGCAATTTCTGTTGCTCCTCCCTGGCCTTTGTCTATCTTTTTCTACGAGTTGAAAAGACATAAAGAGAAAAAGCCATACCCAGTATTCCCTGCTGAGCCAATTCTTCCTCTATAGAAATCAGACGGCTGTATTTAGTCACCCTCTCTCCATGACACAGACCTCCCAGTTTGACAAACCGAACTCCCAAACCAACAGCCTGGAGGCAGAGATTCACAAAGCAAGGATTATTGAAATAGGAAATAAACATATTACTTAATTTCATTACATGGCAATATTGCAAAATTCTTCAGCTGCCAGAAAAggtttgcctttcttttttctttctgtgggCTAAATAAGAAGCTATCCCATAGACTGTCAGTGtagtgtgtaaatgtgtggatgagtaaacacatttgtacatACTTGTTAGAAAACGGGAAGGtggtatgattttttttttttttgtggattgTTTTTTCACGTAAGAAAATTATgttcaatcaaaataaactttaaaaaatatatatattttaaatgatcaatGCTATTGATTGAAACACAATAggtaatattgaaaacaaatgcagggtacatattttgttaaggCTATAATATgtcaataatttattaaaacaccagTAAGCCGGTATTTTAGCCACTAGAAATATGAGGGGCTGAAACttcatttacaaataatttgtgttttttgatgTTCATGATTTGCATTAATTGAAGTGTTTCATTTCAAGAATGTGAAAGCAGTACAAACAAAGCCTATTTTTCCAATGAGGAAAACTGGATTTTTTGAGGTTCTGCAGGAGCCGTCCTCACCAGGTCTGAGAGAGCGTCGTCACAGGGTTCTCCGTCCGTTGTCCCAATGACAGTCAGGCACTTCTGATCTGAAACAGTAGCCATGACATTTCTTATCTAAGGTCAGTGTTACACAAGTACcattttctaaaaaatacatataaatattttactacTCTTGTTTTCTAACTGTCTGCAGTCAGGCATGATGCTCTTAATAATACTAACtagtcaaatgtattcaatgcGAGGAGTAACTGCCAATATATATCCTGACTAAACCCTTTTTTTAGGTAGGAAAGACTCTGCCCAATGCATTGTGTATTATAATTGCAATCTAAAGCTGGATTCTTGTACTTAAGGTACAATCTTTCTTGTAAGAGCCACCATATGCAATTCAATGGAAGAGCCTGcttacagtaaaatatacacTTCAGTCATTGTCAATGTTGTTATGCCGTTACAGAGCACTCTCTGCACATTAAATGGGACTCGGCATACATTTCATTGCCTCTAATTTAATTCCCTGCACTGACCACAGAGTATAATCTGTAATTGAGCCTGGGGCagttatatgtgttttttttatttaaacttaataTGGTCACACAATTTATCAACCTTTCTaaaatgtggtttgtttttaaacaaatgttttcgtTAAGATAcgtaacaatataaaaaagtctatacattaaaaaagtacatttaaa

Function

GO: NA

KEGG:

id description
ko04530 Tight junction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003119 True 4847 mRNA 0.41 18 12009616 12051093

Neighbor

gene id symbol gene type direction distance location
AMCG00003117 hspa12a,LOC107583519,LOC107663288 coding downstream 47544 11937717 ~ 11962072 (-)
AMCG00003118 NA coding downstream 74217 11932466 ~ 11935399 (-)
AMCG00003113 NA coding downstream 188302 11807910 ~ 11821314 (-)
AMCG00003114 gbf1 coding downstream 206744 11799655 ~ 11802872 (-)
AMCG00003105 hells coding downstream 447311 11551691 ~ 11562305 (-)
AMCG00003124 atp6v1ba,atp6v1b2,LOC103376450,LOC107717111,LOC108239171,LOC106513841 coding upstream 2787 12053880 ~ 12073797 (-)
AMCG00003123 vax2 coding upstream 39060 12090153 ~ 12098413 (-)
AMCG00003126 NA coding upstream 107717 12158810 ~ 12163340 (-)
AMCG00003127 NA coding upstream 311169 12362262 ~ 12385026 (-)
AMCG00003133 NA coding upstream 528896 12579989 ~ 12585968 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 212602 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 219690 11786414 ~ 11789926 (-)
G140756 NA non-coding downstream 383235 11625425 ~ 11626381 (-)
G140742 NA non-coding downstream 409660 11598058 ~ 11599956 (-)
G140704 NA non-coding downstream 675932 11332429 ~ 11333684 (-)
G140883 NA non-coding upstream 306353 12357446 ~ 12362204 (-)
G140904 NA non-coding upstream 551729 12602822 ~ 12603031 (-)
G140906 NA non-coding upstream 554659 12605752 ~ 12605952 (-)
G140971 NA non-coding upstream 770809 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 1509426 13560519 ~ 13560839 (-)
G140757 NA other downstream 275854 11694006 ~ 11733762 (-)
G140758 NA other downstream 361997 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 386967 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 1678244 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 2402300 9596943 ~ 9607316 (-)
AMCG00003138 NA other upstream 677145 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 799928 12851021 ~ 12855341 (-)
G141004 NA other upstream 810333 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 1356179 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 2618322 14669415 ~ 14674420 (-)

Expression


Co-expression Network