AMCG00003123 (vax2)


Basic Information

Item Value
gene id AMCG00003123
gene name vax2
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12090153 ~ 12098413 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003123
ATGGATGTCAGATACAATCAAGACACTGAGACGGGGATCGTGCTGAAGAACGGACTTAAGGAAGCGAAAGAGAGCAAGGATTCCCAAGGAAATCTTTCCAAATCGTTTCTGAAGGAGCAGCAGGAGACCTTTTCAGCTTCTGGGACATCggaaaactgtgaaaaaaacagGGCGAACTCGGCGGACCCAGACTACTGCAGGAGAATCCTTGTCAGAGATGCCAAAGGGTCCATCAGGGAGATTATTCTGCCAAAAGGTTTGGATTTGGACCGACCCAAACGCACCAGAACCTCTTTCACCGCAGAGCAGCTTTACCGGCTGGAGATGGAGTTCCAGAGGTGTCAGTACGTTGTGGGACGAGAGCGGACCGAGCTGGCCCGGCAGCTCAATCTCTCCGAAACTCAGGGCCGACTGCTCACTCCTCCTGGCCTACCTGGACTTCTGCCCCACTGCACCAGCACTACCCTGGGCTCTGCACTTAGAGCCCCTTCCATGGGCATTACCAACAATGGCACAAGCACCACCGGCTCAGGGACAGCTGGCAGTTCACCGATTCCAGTGGTCACCACCTCAGGGGCAGCAACTGGGCTACAAGGCTCTCCGCCCACCCACGGCCTCTTCAGCTTCCCCATGCCCTCCCTCCTGGGCTCCGTGGCCACCCGGATTTCCAACCCCCTGTCCATGGCTGGCTCTTTGGCTGGGAACTTGCAGGAACTGTCAGCCCGATACCTGAGCTCTTCCGCTTTCGAACCCTACTCCAGGACCAACAGTAAGGAAGCAATGGACAAAAAAGTACTGGAAtaa

Function

symbol description
vax2 Enables sequence-specific DNA binding activity. Acts upstream of or within several processes, including camera-type eye morphogenesis; negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; and regulation of retinal ganglion cell axon guidance. Predicted to be active in nucleus. Is expressed in diencephalon; forebrain neural rod; head; and immature eye. Orthologous to human VAX2 (ventral anterior homeobox 2).

NR:

description
PREDICTED: ventral anterior homeobox 2

GO:

id name namespace
GO:0061386 closure of optic fissure biological_process
GO:0090259 regulation of retinal ganglion cell axon guidance biological_process
GO:0021554 optic nerve development biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator biological_process
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K09318 VAX; homeobox protein ventral anterior

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003123 True 804 mRNA 0.55 3 12090153 12098413

Neighbor

gene id symbol gene type direction distance location
AMCG00003124 atp6v1ba,atp6v1b2,LOC103376450,LOC107717111,LOC108239171,LOC106513841 coding downstream 16356 12053880 ~ 12073797 (-)
AMCG00003119 NA coding downstream 39060 12009616 ~ 12051093 (-)
AMCG00003117 hspa12a,LOC107583519,LOC107663288 coding downstream 128081 11937717 ~ 11962072 (-)
AMCG00003118 NA coding downstream 154754 11932466 ~ 11935399 (-)
AMCG00003113 NA coding downstream 268839 11807910 ~ 11821314 (-)
AMCG00003126 NA coding upstream 60397 12158810 ~ 12163340 (-)
AMCG00003127 NA coding upstream 263849 12362262 ~ 12385026 (-)
AMCG00003133 NA coding upstream 481576 12579989 ~ 12585968 (-)
AMCG00003134 NA coding upstream 515592 12614005 ~ 12645249 (-)
AMCG00003136 eif3a,LOC107585261 coding upstream 583199 12681612 ~ 12699795 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 293139 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 300227 11786414 ~ 11789926 (-)
G140756 NA non-coding downstream 463772 11625425 ~ 11626381 (-)
G140742 NA non-coding downstream 490197 11598058 ~ 11599956 (-)
G140704 NA non-coding downstream 756469 11332429 ~ 11333684 (-)
G140883 NA non-coding upstream 259033 12357446 ~ 12362204 (-)
G140904 NA non-coding upstream 504409 12602822 ~ 12603031 (-)
G140906 NA non-coding upstream 507339 12605752 ~ 12605952 (-)
G140971 NA non-coding upstream 723489 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 1462106 13560519 ~ 13560839 (-)
G140757 NA other downstream 356391 11694006 ~ 11733762 (-)
G140758 NA other downstream 442534 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 467504 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 1758781 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 2482837 9596943 ~ 9607316 (-)
AMCG00003138 NA other upstream 629825 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 752608 12851021 ~ 12855341 (-)
G141004 NA other upstream 763013 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 1308859 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 2571002 14669415 ~ 14674420 (-)

Expression


Co-expression Network