AMCG00003124 (atp6v1ba,atp6v1b2,LOC103376450,LOC107717111,LOC108239171,LOC106513841)


Basic Information

Item Value
gene id AMCG00003124
gene name atp6v1ba,atp6v1b2,LOC103376450,LOC107717111,LOC108239171,LOC106513841
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12053880 ~ 12073797 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003124
ATGGGCTCTTTAGTATTTCACACCAAGGTGTCCTTCGGGGTGCTAGCTTACTCTACTGTGTCTGGTGTAAATGGACCTCTTGTGATTTTGGATAATGTCAAGttcCCAAAATATGCAGAGATTGTGCATTTGACCCTGCCTGATGGCACAAAGAGAAGTGGCCAGGTGCTGGAAGTTATTGGCACCAAAGCCGTTGTTCAGGTGTTTGAGGGGACATCGGGAATCGATGCAAAGAAAACAGCCTGCGAGTTCACAGGTGACATCCTGCGCACACCTGTGTCTGAGGACATGCTGGGTCGTGTTTTCAATGGCTCAGGGAAACCCATTGACAGAGGACCCACTGTCCTTGCAGAAGATTACCTGGACATTATGGGTCAGCCTATAAACCCACACTGTCGCATCTACCCAGAGGAGATGATTCAAACCGGCATCTCCGCCATCGACGGCATGAACAGCATTGCCAGGGGCCAGAAGATCCCCATATTCTCAGCAGCAGGGCTCCCCCACAATGAGATTGCTGCACAAATATGTCGTCAAGCAGGCCTGGTCCAGAAATCCAAGGATGTGATGGACTACAGTGCAGAAAACTTTGCCATAGTATTTGCAGCTATGGGTGTGAACATGGAGACCGCCCGCTTCTTCAAGTCAGACTTTGAGGAGAATGGCTCAATGGACAATGTGTGCCTGTTCTTAAATCTTGCGAATGACCCTACtaTTGAACGCATTATCACCCCTCGTCTTGCATTAACCACAGCAGAGTACTTGGCCTACCAATGTGAAAAACATGTACTGGTTATTCTGACTGACATGAGCTCCTATGCTGAAGCTTTAAGAGAGGTGTCAGCAGCCCGAGAAGAGGTACCTGGCCGAAGAGGCTTCCCAGGTTACATGTACACTGACCTGGCCACAATCTATGAGCGTGCCGGGAGAGTGGAGGGGAGGAATGGCTCCATCACGCAGATTCCCATCCTCACCATGCCCAATGATGATATCACCCATCCTATTCCTGACTTGACAGGATATATTACTGAGGGGCAGGTCTATGTTGACAGACAGCTGCACAACAGACAGTCGGCTATTGGAGAAGGGATGACTCGTAAAGACCACGCTGATGTCTCCAACCAACTGTATGCCTGCTATGCCATTGGCAAAGATGTCCAGGCCATGAAGGCTGTGGTGGGAGAGGAAGCCCTGACTTCAGATGACTTGCTCTACCTGGAGTTCCTGCAGAAATTCGAGAGGAACTTTGTTGCTCAGGGTCCGTATGATAACAGAAGTGTGTACGAAACCTTAGACATCGGCTGGCAGCTGCTGCGTATCTTCCCCAAAGAGATGCTGAAGAGAATCCCGCAGAGCACTATTGCAGAGTTCTACCCCAGAGAGTCGGCGGCCAGGCACTAA

Function

symbol description
atp6v1ba Predicted to enable ATP binding activity. Predicted to act upstream of or within ATP metabolic process and proton transmembrane transport. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Is expressed in several structures, including mucus secreting cell; nervous system; notochord; polster; and yolk syncytial layer. Human ortholog(s) of this gene implicated in autosomal dominant congenital deafness with onychodystrophy. Orthologous to human ATP6V1B2 (ATPase H+ transporting V1 subunit B2).
atp6v1b2 Predicted to enable ATP binding activity. Predicted to act upstream of or within ATP metabolic process and proton transmembrane transport. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Human ortholog(s) of this gene implicated in autosomal dominant congenital deafness with onychodystrophy. Orthologous to human ATP6V1B2 (ATPase H+ transporting V1 subunit B2).

NR:

description
PREDICTED: V-type proton ATPase subunit B, brain isoform

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K02147 ATPeV1B, ATP6B; V-type H+-transporting ATPase subunit B

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003124 True 1401 mRNA 0.50 14 12053880 12073797

Neighbor

gene id symbol gene type direction distance location
AMCG00003119 NA coding downstream 2787 12009616 ~ 12051093 (-)
AMCG00003117 hspa12a,LOC107583519,LOC107663288 coding downstream 91808 11937717 ~ 11962072 (-)
AMCG00003118 NA coding downstream 118481 11932466 ~ 11935399 (-)
AMCG00003113 NA coding downstream 232566 11807910 ~ 11821314 (-)
AMCG00003114 gbf1 coding downstream 251008 11799655 ~ 11802872 (-)
AMCG00003123 vax2 coding upstream 16356 12090153 ~ 12098413 (-)
AMCG00003126 NA coding upstream 85013 12158810 ~ 12163340 (-)
AMCG00003127 NA coding upstream 288465 12362262 ~ 12385026 (-)
AMCG00003133 NA coding upstream 506192 12579989 ~ 12585968 (-)
AMCG00003134 NA coding upstream 540208 12614005 ~ 12645249 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 256866 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 263954 11786414 ~ 11789926 (-)
G140756 NA non-coding downstream 427499 11625425 ~ 11626381 (-)
G140742 NA non-coding downstream 453924 11598058 ~ 11599956 (-)
G140704 NA non-coding downstream 720196 11332429 ~ 11333684 (-)
G140883 NA non-coding upstream 283649 12357446 ~ 12362204 (-)
G140904 NA non-coding upstream 529025 12602822 ~ 12603031 (-)
G140906 NA non-coding upstream 531955 12605752 ~ 12605952 (-)
G140971 NA non-coding upstream 748105 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 1486722 13560519 ~ 13560839 (-)
G140757 NA other downstream 320118 11694006 ~ 11733762 (-)
G140758 NA other downstream 406261 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 431231 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 1722508 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 2446564 9596943 ~ 9607316 (-)
AMCG00003138 NA other upstream 654441 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 777224 12851021 ~ 12855341 (-)
G141004 NA other upstream 787629 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 1333475 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 2595618 14669415 ~ 14674420 (-)

Expression


Co-expression Network