AMCG00003128


Basic Information

Item Value
gene id AMCG00003128
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12681742 ~ 12682422 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003128
ATGATGGAAACTTTTCAAGCCATGGAAGACAAGCTGGAAAACGGGCCGGCTGACTATCTGCAGACCTCCAGGTATGTGAGCAACGTGTACGAGAACGCGTTCAACTCCTGGAATGACTACCTGGGGCTGACCACCCTCATCACCTGCACAAAAGCGGTGGCCAGCAGGGGCCAGAGCACCATCAGGACCAGCACCGAGGTGGACTTGACTGCAAAGGCGTCTTATTTGGACAAATCGGTGGATTTCAATGAGTTTGGCTTTTGTGCCCACGGAGATCTGGTGCTTCGGGACAGGTACGCGGATTTCAGAGCTTTCTCCGGCCGGTCCAGCCCAGCCCTGCTCGGCGGTTCCCCGGAGTATGCGGGGGAGAGGGCGCTTCAGTGGAGCATGGTGGACGGCAGGAGCCAGCAGACCATGCACAAGCACCGGGGGAAGATGGACATGCAAGTGTGTGTCTTTTGCAGGAATAATAAAGAAAGCGTGGCCCGCTACAGCACGCACATTTTAAAGGGGCCGGACGGGAGGGTCCTGTGTCCAGTGCTGAGGAGGTACACTTGTCCCCTGTGCGGCGCCAATGGGGACAATGCGCACACGATCAAATACTGTCCTCTGTCCAAACTGCAAGTCAGTGCTGCAAAAGCGCAGAAGCCAAGGTGCCTGGCAGGAAAGAAGATCCGCTAG

Function

GO: NA

KEGG:

id description
K18741 NANOS1, NOS1; protein nanos 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003128 True 681 mRNA 0.57 1 12681742 12682422

Neighbor

gene id symbol gene type direction distance location
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 442362 12234557 ~ 12239380 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 528391 12134125 ~ 12153351 (+)
AMCG00003120 NA coding upstream 550837 12122044 ~ 12130905 (+)
AMCG00003122 NA coding upstream 669726 12002034 ~ 12012016 (+)
AMCG00003116 NA coding upstream 751641 11924327 ~ 11930101 (+)
AMCG00003131 LOC107682932 coding downstream 18706 12701128 ~ 12708232 (+)
AMCG00003139 NA coding downstream 40904 12723326 ~ 12723550 (+)
AMCG00003130 NA coding downstream 61324 12743746 ~ 12747836 (+)
AMCG00003140 sirt1 coding downstream 187605 12870027 ~ 12875034 (+)
AMCG00003150 NA coding downstream 263382 12945804 ~ 12948577 (+)
G140872 NA non-coding upstream 395466 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 522991 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1048217 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1143788 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 1191080 11488230 ~ 11490662 (+)
G140961 NA non-coding downstream 139453 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 429315 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 878176 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1160757 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1162324 13844746 ~ 13844952 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 3583 12371999 ~ 12678159 (+)
G140693 NA other upstream 1193858 11486191 ~ 11487884 (+)
G140613 NA other upstream 1469631 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1924902 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1998130 10680771 ~ 10683612 (+)
G140939 NA other downstream 48309 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 196263 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 424034 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1042488 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1440361 14122783 ~ 14131275 (+)

Expression


Co-expression Network