AMCG00003129 (rab11fip2,LOC107585298,LOC107733785)


Basic Information

Item Value
gene id AMCG00003129
gene name rab11fip2,LOC107585298,LOC107733785
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12371999 ~ 12678159 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003129
ATGCGCCGCTGCCTGGGAGAATTCATCGAGTCCAGCTTGGGGCGGAAATGGGTGCCCATAAGGTCGGACATGGAGTGTGCGGCCGATAGTTTCTGCGGTCCCAGGAGCAGTGTGCGCTTGGGTTTGGATTTGAGTTGGCGGTCCTGCTCAGAGAGCTGGGAGTCGGTGTCACAGTGGGGGGATCTGGGCAGGATGGCAGAGGAGGTGTCGGAGAGCATGCCGTCGTGCTTCCGTCCCTTCATCTTGTCTTTCAGCTTCGAGAAAGGCGAGCGGGGCTTGTCCTTCATTGAGAGGTCGAACATGCTGGCCGTCATGTTGTTCCTCATGAACTGGATGCTGACCTGGATCtgccctctctctttcctctttttccctGGTTTAGACTCTAAACTGAACcagctgaaaaacaaagccaGGGTCGGCTTGGCATCGAATCTCGTTGAGGTTGATGGCCTTCTGACCCAGGAACTTGTCCAACCCCACAAGAGACCTGTGCATGACTATAAGATACAGCTCGTATATCTCTGGATTGCCCTCAAGAAGCAATCCTGGGAGTTCGAAGGAGGCCTCCTCTTTCCACACCGGATTGAGTGTCTTCTCAGCCACCGAGGTGGAGTACTTCTCTTTGCCCAACTGGATGATGGTGTAGGCATCATTGGAGCCATGTTTGCCTTTGGGAAGCAAGTCTTTGGCCTGGAGAACACCCAGAGCACCAAACTGGACATGCACCTTGCTCTACTGCACCACAGCGCAGCGGCCACTGGAGACCTGCAGACAAGGGGGTGCGCGCCCATCGTGGGAAATTACGACAGCGTGCAGAATGCTGAGGGTCCCCTCAGACTATTGAAAAACAGATTCCCGGTACAGGCCGAAAACAATCCTTTCTCTGTTTCCTCTGGTCTGCTCTGTGACCTTGCTCCAGGCCAGACGGCTGCAGCAGCTGCCACGGTTAACGTGGTCAGCGGTGCTTTTATTAAAACTCCAACATCCAAGACAGTGGTGACCGGCTTTGACGTGTTGATCAAGGAAATGAAGTGGAGAGAAGGGAAGGAGAACGGAGAGTTGAAGACTGAGACTGTTGAAGAGCCGGGGAGCTCGGTGTCGCAATTCATCGCCGACTCAATTGCCGGGAGTCTGATGAAGATACGTAAACTGATTGCTGTGTTTGGCCACGTTCTCTGTGGGAACCTGAACACAGAAGTTTTACGTTACAGTGTAACAATGACTGAACTGGTGACCTGTGTGTCTTGGACCGCTGTCAAAAGTTTTCCAACATTTCCCTCCCAGGTTTATTCATCTCCAGATATAATAGAACCCACCTATGAAAACCCATTTGAAACCCAGCTTACCACAATCTGCCGGCATGGTAGAGAACGACCGCCACCAAAAATCTCGCCTAGGACTCGATGCGGGCTCTCATGGAGAGGCTCAGGGGCCACAGGGACTAGGGGCTCCAGTGCGAGTCCAGGGTGGGAAGCTGAGCTTAGCCCACTGAGCCACCACGCCAGCAGGGAAACCGCACGTCTCTGCCCGGGTCCAGCTCGTCCTCATTATCGCGGATTGGCGCCACCTGTTGGACAGCAGACTCTGACAGGAGGTGGACAGCCAAGACGTCAGGGGCGCAGGTGCGACTCTGAGaatcATGCAGCTCACATTTCACTCGAACAAAGCCAGCGGCAGCTTATTTCATGGATCACTGGCACTGTCATCGCCGCTGCACAGAGCAGTATGTTTCCTTGTCCAAAGATCATGTGCGACTTTGAGTACGACATCTTTGGCACTAATTTCCTGCAGTACAAAATATCATTTTCACAGCAGAAAATCAAAACTCTCCGTTCCTCCTCTGAAACAGCAGATTTTGACATAAGTGCTGCTGTTACAGGGTGCACGTCAGATCAGGCGCACAGGTTTGGTTTTTATGGGAAGGAGCTGTCCGAGGTCCTGCCAGGCATACAGAATGGCATTCGTGCAAGCGGACATCATGGCGAACCAGTGGCACAGCAGCTGGATCAAGTTGAAGTAGCGCTTGTCAATCAAGTTGATGTCGATGTCCTTCATCATGTTGAAAATGTGCAGCGGCAGCCAGCAAGTAGCAAAAGCTGCAACGACCAAAACCAGCAAGCGGAAGGTTTTTCTCCTCCTGGCCCGGTCCCACTCCGCCTGGCTTTGCGTAATGTTGCCCGGCACGACGCGGTTCCTCAGCTTGACAGAAATCCGCAGTCGCTCTTTCTCCATCCCTACCCAAAACTCCTCGCAGATGGAGAAGTCCAGTTCTGGAAAAGCGACGTGGTAAGTGTGGGCCAGGGCGGGAATAGCCAGCAAGCACGACAGCAGCCATATAGCGGTGAGGATGTAGGCGCAGGCGGGGATGGTGAGCCGGCGCTTCAGGGGATGCACAGTTGCATGGTACCGGTCGACGGCAATGACCGTCATCGTGAAAACGGACACGAAGACGGTCACCGgctgcatcagaaacacaaaatagCACATGAAGACCCCATACACCCAGCCCCGCGGCTCAAAGGCGTACGCCAAGATGACATAGATGAGCAGGTAGTTGCCGAATATGCCGACGAACACCACGCAGCAGTAGCCCGGGATGACCAGCGCCTGGCAGGagtgcagcagctgcagccccGCGAACTGCGGCCACGTGCTGTTGCGCAGCCCGGCCGCGAGCCTGCGCGAGGAGAGGACGACGCTCACAGTGATGCTGTTCCCATACGGGGCGACCCTCCTCCGCCAGGTGAACAGTTTCTTCAGCTCTGTCCTGAAGCTGTCGTGCAGCCAGGCGTAGATGAAGGGATTATAGCACACCGAGCTCATCGCAAACCAGTGGCAGGAGAGCTGCACCAGGTTGAAATAATACTTGCTTATCCTGTCAATGTTGATGTCACgaataatgttaaaaatgtgcAAGGGCAGCCAAGAAATGCCGAACACAACTACGACTATGACCAGCAAGCAAAACGTCCTCTTCTTCCTGGCTTTGTCCCAGTCCGCCTGGGTTTGGGTCACACTGCCGGGCATCACCCTGTTCTTCAGTTTGACCGAAATTCGGATGTAGGAGATGAGAATCACCAACAGCGGCAGAAAGTAGTAAGTGTTGGCCATGGCGGGCACAGCCAGGCAGCAGGCGAGTATCCAGATGAAGAGCATCAGATAAGCGCTCAGCTTCAGCGAGATCCTGCGGCGCAAGGGATGCACGATAGCCATGTACCGATCCACGGCGATGGCGACATCCGTAGTCAAACCCTGGAGACAGAAGCCATTTCTCCGACTTACACAACCAAGATATTCGAGCAGGTGCGCCAGCAGACAGCGGGTCTGaatagagtTCTGCGACCCGACCAGTATTATCCAAGCAGTCGGCTTTATGATGCAAAACAGTCCTGTGATGCACTGAGCAGCTCTGGTAAGAAGGCAGgtatCAAAATACTTGTCAATATCAAAACCAACAACTATAAGCTGCCCTTACCTGGTGAAGCCATTCTGCGCGAGTTCCCTCTGGAGCTTCTGGTCCTGAGCTGCATACTCAGAGAGCTCCGACTCCAGTGCAGGGGCATCTCCAATGAAGGCCAATTAATCCTGCGCTTATCTTCCCAGACAGAGCTCGGACGCATcgataaaaaaacatgcttggTGGCGTATTTCCTCAGTGTAACAAGCAGCCTCATCCGGGGTAGCTTTAATAATTCCCAGAAGCAAACTGGCCAAAGGCTGCAGGAACTGGGTAAACAGAAGCTGACTTCCAACCTCTCGCCCAACCTGCAGAGCTATGGGTGGCATAAGGTGGAACAAAGCCTGCTCAGCCGACACAGAAGGACGAACTTGGAAGTGGAGCTGTTGATGTTGAGGGTGAGTTTCCCAGCTATAGCTGTGGAGGCAGCAGCACTGTCGCAGTCGTCCGGGCCGGCGGCGGCCTCCGGACACGGAAACGCGGTCGCCTCTCCCCGGCAGGACTCGTCTGTCTCACCGGGCGACGCCTGTCCGGGGGGCTCGGTCGGCTGGGGCTGGGGtaggggctggggctgggGCTCGATCACAGTTGCTGATGCTACTTCACTCATGTGCCGTATTTTTCGCTTCGGCTTTGCGACACTTTTGCAGCAGACCCCTTGCCGAGACTTCTGGGAAATgAATGACTCCGATAACAGTCAGACAAGAACGCCTGCAGGACCAGCGTTTGAAGAGGAGTGTGGTGTGGCCGAGAGGAGGGCCAGCATAAAGAGTGATTGGGCTTGTACACCACAGGATCTATCAATAGTTGTCAAGCCCAGTAATAACAGGCTCCTGCTGCACGACCTGTTTGTTGAGGTTATTTTAAACTTTCTGTATGACAAATACCTCGTTGACCAAGAGGAAGTGTGGCCCGAGTATTACGGTGAGAAATTTGCATGCGCGGCGAGCATCTACGAAGGTATCAGCAGATGGAGGACTGCCCTTCAGCAGGAAAGCATCTTCCACTGTGAAGAAACACAGGCACATCCCAGCTGTTCGGGGCCCTGTGATGTTCCTTCACTTAAAAGGCTCTTGCCCCTGGCTCTTTGCCGCTCGGCGATTGGTATTAATGCCCGCAGTCAGCCAGTCAATCTATGA
>TU177208
CTTGTTTCATCTTCACTGTAATACTTGGCTGTTAATACAGCGCATATCCCCATACGTGACTATAACAAAGCCAAATGTGCTAGGGCCAGGATTGACAGGTCAGGCAAATTCAGGAActgtttttacagaaaatattctAAACTGTAACACTTAATTCCTTCACAAAGCCTTTCCCACAAGTAGTGATTATAGACTTCCTGCCTATTAAATCTTATGTTCAAATTTCCATCCTGCATGTTTtatctgttttgattttaaatgttgtaatttattGTACAATTTAGTGCCCTTCTTTCTGGTGAAGGCATGACTGCAGCATTAAATTAATTGACTGCACTGTCACTACAGGAATACACTTtattatatgtgaaaataaCATACCATCTACTTATACTTGTGTCTAAGCAACTACAATTGCACTATTTTGATGAAAGTCTGCAGAAAGATAGCGAACAGCTTATTTATGGTACGGTGTGTTTATAGTtaacagtacacacacacacacacacacacacacacacacaattcctTTGTTTCTTaggacaaaaacacaacacctcCTATTAAGAAACACAGTCATCTTCACGTTTCATATTACAATAAAGAAAGAGCTGCACCGAATTAGCAATGATTGAATGTCTCTTTGGGAATCTCATATTAGTCTGGACAGGATACAACACATGGCAATATTATCTTTTCATCATTGCATTTTTCAAGGTTTTGGAGGGCTGTCATGACTCTTTTCTCTTTATAAAGCTGCacgttttcttctttctttcaaacaaagcctgtgtttttcatgaaaatgtaatatgcaaTGTAgtcagacaacacacacacacatacacacacaaactgctcATTTTTAAATAGAACTGCCAAATACACTACATATCAAACATGATGGTATCTTAATTGctgactggaaaataaaaaagttgctAAAAGCTGTGGGCTAATCATTTTCATTGCCATTGTCCAAGGCAGTATTATAATtgatgtttgaaaacaaaaaatctgaaatgttaatgtctttccCAGCACGACTAAAAACAAAGTTACTTGATACTGCCCACTGTGGAAAAATCAGATGACAAGCACCTTTTCTGTAACTCTTGGGCTTAGCATACTTTAACACACCCTATTCAAGCACACTGTCTTGTATTGTAATACCTCATTTGTTATTGCAGCTGTGCCTTGGACTCTATGTTTGCTTCACTTTAATGATCATAGATCATGTCTTAATGATAATTACGAGCTTACCAATACAATTTACAAGTGAGTCCATTTTAAGAGAAGGCAATTCATTCTACATAcgattatgtttttctttacagaaGGATGTTGTCGTTTTTCGTTTGCTATACATCCTCTGTacgttttattttctccattaaCCACAGACCTAAACCACTTAGAGAAGCCCTGTACCTCGTCTTTGCCCCGGTGGTGGCGGTCTTGTAGCTGGAGGCGAAGGGGTTGGAGTCCTTGTCTCCGGGTCCGTCATCACTGAAGGGATTGGGGGAGCGCAGATCCCCGGAGCTGCCCGATTTGGCCCCGTTGCTGATCTTCTTCCCGTCTTTCTTCCCGGTCACTCTCTCCAACAGACTCActttctcctttttctccttcttgtCGGGTTTGTCCCAGGACATCGTCTGCTCACTTTCGAAGGGGTTCCTGTTCCGCGGCAGGGTGGCGTACTTCTGAGGCAAGGAGTccgagatatctgcaaacggGTCGCCGTGGCTGTCGCTCTTGCCGTAGTTCTGGCTGGGCAGGCCATGTGGCACCTCGCTCTGGGACCTTCGGTGTGGGGATGCGCCGCTGCCT
>TU177209
CACTCTCTTCAATAGAATTCATCGAGTCCAGCTTGGGGCGGAAATGGGTGCCCATAAGGTCGGACATGGAGTGTGCGGCCGATAGTTTCTGCGGTCCCAGGAGCAGTGTGCGCTTGGGTTTGGATTTGAGTTGGCGGTCCTGCTCAGAGAGCTGGGAGTCGGTGTCACAGTGGGGGGATCTGGGCAGGATGGCAGAGGAGGTGTCGGAGAGCATGCCGTCGTGCTTCCGTCCCTTCATCTTGTCTTTCAGCTTCGAGAAAGGCGAGCGGGGCTTGTCCTTCATTGAGAGGTCGAACATGCTGGCCGTCATGTTGTTCCTCATGAACTGGATGCTGACCTGGATCtgccctctctctttcctctttttccctGGTTTAGACTCTAAACTGAACcag
>TU177211
TGTTTTCCTTCGTTCCTTTTTGTCAAAGATCTCGTTGAGGTTGATGGCCTTCTGACCCAGGAACTTGTCCAACCCCACAAGAGACCTGTGCATGACTATAAGATACAGCTCGTATATCTCTGGATTGCCCTCAAGAAGCAATCCTGGGAGTTCGAAGGAGGCCTCCTCTTTCCACACCGGATTGAGTGTCTTCTCAGCCACCGAGGTGGAGTACTTCTCTTTGCCCAACTGGATGATGGTGTAGGCATCATTGGAGCCATGTTTGCCTTTGGGAAGCAAGTCTTTGGCCTGGAGAACAGTGGCTTGCACATGTGTTGGAAACCACTTTTGGGACTGTTCTGCAAGTGACATGTTTAGCTCACTTAAAGAAAGATTGTACTTGACGACAAATGATG

Function

symbol description
rab11fip2 Acts upstream of or within neural crest cell migration. Predicted to be located in membrane. Predicted to be active in endosome and phagocytic cup. Is expressed in hindbrain; neural crest; and pharyngeal arch.

NR:

description
PREDICTED: rab11 family-interacting protein 2

GO:

id name namespace
GO:0007154 cell communication biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003129 True 4599 mRNA 0.54 36 12373818 12678159
TU177208 False 1833 lncRNA 0.41 1 12371999 12373831
TU177209 False 395 TUCP 0.55 1 12373966 12374360
TU177211 False 395 lncRNA 0.47 1 12384676 12385070

Neighbor

gene id symbol gene type direction distance location
AMCG00003125 emx2,LOC107666392,LOC107711418,LOC107733718 coding upstream 132619 12234557 ~ 12239380 (+)
AMCG00003121 slc18a2,LOC107670861,LOC107689804,LOC107715963,LOC107744594 coding upstream 218648 12134125 ~ 12153351 (+)
AMCG00003120 NA coding upstream 241094 12122044 ~ 12130905 (+)
AMCG00003122 NA coding upstream 359983 12002034 ~ 12012016 (+)
AMCG00003116 NA coding upstream 441898 11924327 ~ 11930101 (+)
AMCG00003128 NA coding downstream 3583 12681742 ~ 12682422 (+)
AMCG00003131 LOC107682932 coding downstream 22969 12701128 ~ 12708232 (+)
AMCG00003139 NA coding downstream 45167 12723326 ~ 12723550 (+)
AMCG00003130 NA coding downstream 65587 12743746 ~ 12747836 (+)
AMCG00003140 sirt1 coding downstream 191868 12870027 ~ 12875034 (+)
G140872 NA non-coding upstream 85723 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 213248 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 738474 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 834045 11537647 ~ 11537954 (+)
G140694 NA non-coding upstream 881337 11488230 ~ 11490662 (+)
G140961 NA non-coding downstream 143716 12821875 ~ 12831106 (+)
G141066 NA non-coding downstream 433578 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 882439 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 1165020 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 1166587 13844746 ~ 13844952 (+)
G140693 NA other upstream 884115 11486191 ~ 11487884 (+)
G140613 NA other upstream 1159888 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 1615159 10754901 ~ 10756840 (+)
AMCG00003066 LOC105931228,LOC105012084,LOC107588449,LOC107706116,LOC108435714,LOC103374338,LOC103154480 other upstream 1688387 10680771 ~ 10683612 (+)
AMCG00003019 NA other upstream 2518546 9844776 ~ 9853453 (+)
G140939 NA other downstream 52572 12730731 ~ 12739767 (+)
AMCG00003141 LOC105923605 other downstream 200526 12878685 ~ 12882998 (+)
AMCG00003158 NA other downstream 428297 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 1046751 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1444624 14122783 ~ 14131275 (+)

Expression


Co-expression Network