AMCG00003132



Basic Information


Item Value
gene id AMCG00003132
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12747436 ~ 12756469 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00003132
CGCGTGTTCAGTGGAAGTAGTTTATCAGTTTAGATATCAATTTAGAGAATAAGTAATCACGCCCCATTGCCTCAGGAGACTTGGAATTCTCTCCATTTacctacaaaattaaaatgTCTGCTACAAGTGCAAATCCATCTACACCTAACACtacaaatacagcaaatacaacATCTGCACCTACAAATACATCTACACCTgctACGGATGGAACTACCTTAAGCGAGCCACAACAGTGTTTCTCTGATCTGGACATTGGTCTTGCTGCTGGGATCCCAGGCTTTGTGGCTGTTGCGCTCCTGGTagctttaattgtgtttgtgatcATGGTGAAGAAACAGAGAAAGGACCCTCCTAACATTGAGCAGCCTAATCAAGCAGAGACATCGGACTACTATAATGTTTCTGTGGATAGTCATTACATGTCACTAAATCAGCGCCCCTTACCACGGATCCCGGCTAAACAAGAAAATGTCTATCACTCAAACCTACCGAATGTTTACAACAATCATGCAGTCGTAAACAAATGACATCACCTGGAAATCCCGAAATGATTCTGTACATTGCAGCTGGTGCCTTCAGTGAAATTCAAATGGACTAATTATTTTTCATGGCATCCCAGCACAATCCTATATAACTTGAATTTTATAGGTTCCTCTCTTAATTGTTTGTCATGGTCCTGTATTAAGGAGAGGTGGGCATGTTTAATTTCAGCAAAGGGAAAAACCAGAGACTATTCTAAAGGGGGGGAAAACATCAGAAAGTAGTGCTTTGGGATTAGTTTTCAAGTTAGTCTAGTGGTTTGTAAACTTTGACTTCTATCTGAATCTAATGACTACATAAATCACTAAACCTGTGTGAAGACGACAGATTTTTTTCAGAGTGCACAAACAAGTAACTTCTGTCAACTATTTAATTTGCCTGCTATTTATCACAACTGAATTGCTAAttgttgtttataatttgattgtaagctaatacaatttatttttgtattaattaccaGGATATTAATAGTGAGTGTAACATGTGCGTAACATTTTATGGCATTATTAGAATTAATATTCTTGTATGATTGCAGTCACTCCAACAAGCAGGACAATGTTCAATGTAACAGACTAGCAGAGTAACTTAATGATTAACCAAgaaagtcaaattaaatgtatattttatgttccTGATTTGTCACGAAATGTCtgaatttcatgcttttattcaTTCCTGCTGCTAATGGCAAAGAGTTTGCAAATGGAAAGTTTTGCTAATTAATGATATATTTCTTTAGAttcataattacaaataaataacaggatCGAAATGAATGTACTTTGTTCTACTTTGAGTCATTCACTGATTAGCTTTACATGAATCAGATGTTTTCctaataaatgaattaatggataaaatatgtattttaaaatggcaagatAGTTTCTACTAAGATTGTCCTGCactattataaaacatttcagtgaGGAAAGTAGGAGAAACAAATCAGAGATATGCAAtgaatattcatttatttgctaCACAAAACTACACagataaaaactatttaaaaatacagtaaaagacTAACTGAATGACTGGCTTAAATAAGTCAGTACATTCTTAACCATTAATAAAATTAAGTGCAAAGCAAGATCTTATGTAACATAAgatcatatattatattatgtatgcaCTCTTGATCTGAAAATAATCCGATCAATCTTTTGCCTGAATATTATGAAGCAGAAATGGATTGGAAATTAATTGGATAGTGGAGATAGTGGACATTTTAACCTCACAGACTGAGGTGTGtgaaaagatacaaaaatacagacaaaGCTGATGAGGTGAGAGTGAAAGGGACCAACACTGCTCAGAAATTCAGCGTCTCTGACATCATCTTCCACCATCGCTCCAGCTGCTGCTCTTCAGTGTCTTTCTGCTGCAGATTCTTCAGCTGGAAATCCACCTATTGGACAGGAAGTCACAAATCCATTTGGGGATGGAAATGAATTTCCTCACAATGTAACATATCCCCAGTCCTGTCCCTCACACAGAAtagaaatgtctctgtgtgaAATTGGAATCATGTTTAATTTGctataaacatgtataaatgtataaaaactgacaaaaaaaattatcaaCTATTGTCAACCTCATGCAGAGTGTTATATAATGTTATGAATTGTATAGGTGTGCAGGAAACTTCATCCATTGTGATAAACaacatattattaaaaacaacaccacaCGAAATATCTACATTTGTTc

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00003132 True 2265 mRNA 0.35 8 12747436 12756469

Neighbor


gene id symbol gene type direction distance location
AMCG00003137 prdx3,LOC100194723 coding downstream 26015 12717621 ~ 12721421 (-)
AMCG00003135 NA coding downstream 35507 12710331 ~ 12711929 (-)
AMCG00003136 eif3a,LOC107585261 coding downstream 47641 12681612 ~ 12699795 (-)
AMCG00003134 NA coding downstream 102187 12614005 ~ 12645249 (-)
AMCG00003133 NA coding downstream 161468 12579989 ~ 12585968 (-)
AMCG00003145 tll1,bmp1a,bmp1,LOC106534203,LOC107591552 coding upstream 4373 12760842 ~ 12785286 (-)
AMCG00003142 tm9s3,tm9sf3 coding upstream 67478 12823947 ~ 12848833 (-)
AMCG00003143 NA coding upstream 105826 12862295 ~ 12869324 (-)
AMCG00003146 herc4 coding upstream 122340 12878809 ~ 12899145 (-)
AMCG00003147 NA coding upstream 149071 12905540 ~ 12916369 (-)
G140906 NA non-coding downstream 141484 12605752 ~ 12605952 (-)
G140904 NA non-coding downstream 144405 12602822 ~ 12603031 (-)
G140883 NA non-coding downstream 385232 12357446 ~ 12362204 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 950422 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 957510 11786414 ~ 11789926 (-)
G140971 NA non-coding upstream 65433 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 804050 13560519 ~ 13560839 (-)
G141201 NA non-coding upstream 1009487 13765956 ~ 13836294 (-)
G141219 LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390 non-coding upstream 1066945 13823414 ~ 13834549 (-)
G141221 NA non-coding upstream 1086710 13843179 ~ 13843471 (-)
AMCG00003138 NA other downstream 7629 12728238 ~ 12739807 (-)
G140757 NA other downstream 1013674 11694006 ~ 11733762 (-)
G140758 NA other downstream 1099817 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 1124787 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 2416064 10301800 ~ 10331372 (-)
AMCG00003144 NA other upstream 94552 12851021 ~ 12855341 (-)
G141004 NA other upstream 104957 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 650803 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 1912946 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 2300174 15056643 ~ 15140819 (-)

Expression



Co-expression Network