AMCG00003135


Basic Information

Item Value
gene id AMCG00003135
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12710331 ~ 12711929 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003135
TTCCTCAGTTTATGATGAAGCATTATGGACTGAGAAACCAAGCCGTCCAAACATTCTTTAGAACAGTGCTTCCTGTTCCTCTTTTTGCTTTTCTGGGCGCCTTCAATGTAATGATCGTCCGAGGTGAGGAGTTTGAGAATGGGATCGAGGTCTTCGATGCCAATGGGAATGTGGTTGGCGTTTCACAGAAAGTTGGGTTGAAGgCTGTTGGTGAAACTGCAGTGTCTAGAGCTCTGCTCATCGGTACCACAGCAGCTGTGCCTAACCTGCTCATCAGTTTTATACAAAGGAGAAGATTCATCCAAAGGAGCCCATTGGTTCTAGCTCCACTAAGACACATCGCCACTGCCTTCGTGCTGGGACTAATGATCCCAGTTTCCTTCAGTCTGTTCCCACATGTTGGAAAGGTACAAAAGGCTAACTTGGAGGAGGAAttccagacagacacacagctatACTACCACAGAGGACTC

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process

KEGG:

id description
K23502 SFXN4; sideroflexin-4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003135 True 473 mRNA 0.47 5 12710331 12711929

Neighbor

gene id symbol gene type direction distance location
AMCG00003136 eif3a,LOC107585261 coding downstream 10536 12681612 ~ 12699795 (-)
AMCG00003134 NA coding downstream 65082 12614005 ~ 12645249 (-)
AMCG00003133 NA coding downstream 124363 12579989 ~ 12585968 (-)
AMCG00003127 NA coding downstream 325305 12362262 ~ 12385026 (-)
AMCG00003126 NA coding downstream 546991 12158810 ~ 12163340 (-)
AMCG00003137 prdx3,LOC100194723 coding upstream 5692 12717621 ~ 12721421 (-)
AMCG00003132 NA coding upstream 35507 12747436 ~ 12756469 (-)
AMCG00003145 tll1,bmp1a,bmp1,LOC106534203,LOC107591552 coding upstream 48913 12760842 ~ 12785286 (-)
AMCG00003142 tm9s3,tm9sf3 coding upstream 112018 12823947 ~ 12848833 (-)
AMCG00003143 NA coding upstream 150366 12862295 ~ 12869324 (-)
G140906 NA non-coding downstream 104379 12605752 ~ 12605952 (-)
G140904 NA non-coding downstream 107300 12602822 ~ 12603031 (-)
G140883 NA non-coding downstream 348127 12357446 ~ 12362204 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 913317 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 920405 11786414 ~ 11789926 (-)
G140971 NA non-coding upstream 109973 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 848590 13560519 ~ 13560839 (-)
G141201 NA non-coding upstream 1054027 13765956 ~ 13836294 (-)
G141219 LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390 non-coding upstream 1111485 13823414 ~ 13834549 (-)
G141221 NA non-coding upstream 1131250 13843179 ~ 13843471 (-)
G140757 NA other downstream 976569 11694006 ~ 11733762 (-)
G140758 NA other downstream 1062712 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 1087682 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 2378959 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 3103015 9596943 ~ 9607316 (-)
AMCG00003138 NA other upstream 16309 12728238 ~ 12739807 (-)
AMCG00003144 NA other upstream 139092 12851021 ~ 12855341 (-)
G141004 NA other upstream 149497 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 695343 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 1957486 14669415 ~ 14674420 (-)

Expression


Co-expression Network