AMCG00003138


Basic Information

Item Value
gene id AMCG00003138
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12728238 ~ 12739807 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003138
CGCTCATTGGTCCCGCTCACACTGGAGTGGGAGTCCGTCTGCTCGCCTGGCCATTCACGGCCCGGGACCGACTGCGTGCTGGAGCTCGTCTCGGTttggaaagaaaggaaggaaggaagcaagcaaaaaaaaaagaagaaaagaaaacacgccactGAGAAGGACGACAGCAAACTCAATATCCAGGAGACCGCGTCCCCCAAACAGACTAGCAAAGGAATAGGGGCCGAGGGAAACGCAGATGGAGCCACTTTTGACTCGCAAGATGGCAACTCGCAAACCCGCAAAGCAACCCTGGAGCTTCACAAGGAAGTCCTGGCTCTTCAGAAAGAAAAGCTCATCCTAGAGAATGAAAAACTTCAACTACAAATTGAAAAGATCAAACTCAGGAAAGCGAAAATATGCAGCTAATCTCTAGGTCGAGCTGAAGTTAAGACGCACAAATTTGACAAGTAATGTTATGTATCAATGTCTTCAGTCAATACACCACCGGCTGATTTAGTATGGATATCTTCTTCAATAAGTTAGcagttaacaaaacaaatgtagaagtaaattatgcaaaatacaaaaaggaaaaaaaaaaaatcttgctcAGTATGAAACATGTTTAGATCAACCGAAGAAGTCTTTATGTGCTTtgactgtatttttgtttttgatgcatGGGAGAGGGGTGGATCTGTATGACTTCTGTCTACATCGGCAATGGGACAGAGGTGATCATTTTAGACACCCTGTCCACAAGGAGGTTAATGTCCAACTTTGactaaatgttttcattaaaggtCCACtgatgcatacattttcaattaattctaataaaaagaaaagcacaccaTTTGCAAAACTAAGGTCAGGAAGCATGTTACTCACAGTTGTCTTAACATAAGTTGAGCTTTCATATCACTTTCAGTTTGTTTAGTGGTAGGAAGAAACCAGCcaaattttgttttactattgtttctaaattattgcttttttatgtgttttttttttatgttggtttgattctgtttttttacatttttaaaatgatttttccataatttattttactctttctGCTTTTTCTGAATATACTGTACCTTTCTTTCCAATGTTCTCATATTggaaataaaacta
>TU177299
TCACACTGGAGTGGGAGTCCGTCTGCTCGCCTGGCCATTCACGGCCCGGGACCGACTGCGTGCTGGAGCTCGTCTCGGTttggaaagaaaggaaggaaggaagcaagcaaaaaaaaaagaagaaaagaaaacacgccactgtatatacagtacgcAGCCTCGCTTGATTTCATCTGAAGGAGAAGGACGACAGCAAACTCAATATCCAGGAGACCGCGTCCCCCAAACAGACTAGCAAAGGAATAGGGGCCGAGGGAAACGCAGAAATTTCCCATGGACTTTCAACAGCAGAAGCTGAACGGAGAAAACTTACAAGTGTACAGTTCATCAAGGGTTGTTCAAGAACAAGCAAATAACCCTGTACCTCTTCATTGTCCGAAGGAAAATCGACAAGATGGAGCCACTTTTGACTCGCAAGATGGCAACTCGCAAACCCGCAAAGCAACCCTGGAGCTTCACAAGGAAGTCCTGGCTCTTCAGAAAGAAAAGCTCATCCTAGAGAATGAAAAACTTCAACTACAAATTGAAAAGATCAAACTCAGGAAAGCGAAAATATGCAGCTAATCTCTAGGTCGAGCTGAAGTTAAGACGCACAAATTTGACAAGTAATGTTATGTATCAATGTCTTCAGTCAATACACCACCGGCTGATTTAGTATGGATATCTTCTTCAATAAGTTAGcagttaacaaaacaaatgtagaagtaaattatgcaaaatacaaaaaggaaaaaaaaaaaatcttgctcAGTATGAAACATGTTTAGATCAACCGAAGAAGTCTTTATGTGCTTtgactgtatttttgtttttgatgcatGGGAGAGGGGTGGATCTGTATGACTTCTGTCTACATCGGCAATGGGACAGAGGTGATCATTTTAGACACCCTGTCCACAAGGAGGTTAATGTCCAACTTTGactaaatgttttcattaaaggtCCACtgatgcatacattttcaattaattctaataaaaagaaaagcacaccaTTTGCAAAACTAAGGTCAGGAAGCATGTTACTCACAGTTGTCTTAACATAAGTTGAGCTTTCATATCACTTTCAGTTTGTTTAGTGGTAGGAAGAAACCAGCcaaattttgttttactattgtttctaaattattgcttttttatgtgttttttttttatgttggtttgattctgtttttttacatttttaaaatgatttttccataatttattttactctttctGCTTTTTCTGAATATACTGTACC
>TU177301
TCACACTGGAGTGGGAGTCCGTCTGCTCGCCTGGCCATTCACGGCCCGGGACCGACTGCGTGCTGGAGCTCGTCTCGGTttggaaagaaaggaaggaaggaagcaagcaaaaaaaaaagaagaaaagaaaacacgccactgtatatacagtacgcAGCCTCGCTTGATTTCATCTGAAGGAGAAGGACGACAGCAAACTCAATATCCAGGAGACCGCGTCCCCCAAACAGACTAGCAAAGGAATAGGGGCCGAGGGAAACGCAGgaaagaaaacaaataatgtccAGGAGAAGGAATGACAGGTGTTGAAGAGAACTGGTGAAGACCTGTGTTCCTGGCTGGAGAGGAGTTGATCTGCCAGCACCTAGGAACAACCAGTCTTCAGCTGCCAGTTCATTaccagaaacacaaaaaaagaatcTCAACTAAATTTCCCATGGACTTTCAACAGCAGAAGCTGAACGGAGAAAACTTACAAGTGTACAGTTCATCAAGGGTTGTTCAAGAACAAGCAAATAACCCTGTACCTCTTCATTGTCCGAAGGAAAATCGACAAGATGGAGCCACTTTTGACTCGCAAGATGGCAACTCGCAAACCCGCAAAGCAACCCTGGAGCTTCACAAGGAAGTCCTGGCTCTTCAGAAAGAAAAGCTCATCCTAGAGAATGAAAAACTTCAACTACAAATTGAAAAGATCAAACTCAGGAAAGCGAAAATATGCAGCTAATCTCTAGGTCGAGCTGAAGTTAAGACGCACAAATTTGACAAGTAATGTTATGTATCAATGTCTTCAGTCAATACACCACCGGCTGATTTAGTATGGATATCTTCTTCAATAAGTTAGcagttaacaaaacaaatgtagaagtaaattatgcaaaatacaaaaaggaaaaaaaaaaaatcttgctcAGTATGAAACATGTTTAGATCAACCGAAGAAGTCTTTATGTGCTTtgactgtatttttgtttttgatgcatGGGAGAGGGGTGGATCTGTATGACTTCTGTCTACATCGGCAATGGGACAGAGGTGATCATTTTAGACACCCTGTCCACAAGGAGGTTAATGTCCAACTTTGactaaatgttttcattaaaggtCCACtgatgcatacattttcaattaattctaataaaaagaaaagcacaccaTTTGCAAAACTAAGGTCAGGAAGCATGTTACTCACAGTTGTCTTAACATAAGTTGAGCTTTCATATCACTTTCAGTTTGTTTAGTGGTAGGAAGAAACCAGCcaaattttgttttactattgtttctaaattattgcttttttatgtgttttttttttatgttggtttgattctgtttttttacatttttaaaatgatttttccataatttattttactctttctGCTTTTTCTGAATATACTGTACC

Function

GO:

id name namespace
GO:0030123 AP-3 adaptor complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003138 False 1125 mRNA 0.38 3 12728238 12739807
TU177299 False 1242 lncRNA 0.39 4 12728274 12739791
TU177301 True 1405 lncRNA 0.40 5 12728274 12739791

Neighbor

gene id symbol gene type direction distance location
AMCG00003137 prdx3,LOC100194723 coding downstream 6817 12717621 ~ 12721421 (-)
AMCG00003135 NA coding downstream 16309 12710331 ~ 12711929 (-)
AMCG00003136 eif3a,LOC107585261 coding downstream 28443 12681612 ~ 12699795 (-)
AMCG00003134 NA coding downstream 82989 12614005 ~ 12645249 (-)
AMCG00003133 NA coding downstream 142270 12579989 ~ 12585968 (-)
AMCG00003132 NA coding upstream 7629 12747436 ~ 12756469 (-)
AMCG00003145 tll1,bmp1a,bmp1,LOC106534203,LOC107591552 coding upstream 21035 12760842 ~ 12785286 (-)
AMCG00003142 tm9s3,tm9sf3 coding upstream 84140 12823947 ~ 12848833 (-)
AMCG00003143 NA coding upstream 122488 12862295 ~ 12869324 (-)
AMCG00003146 herc4 coding upstream 139002 12878809 ~ 12899145 (-)
G140906 NA non-coding downstream 122286 12605752 ~ 12605952 (-)
G140904 NA non-coding downstream 125207 12602822 ~ 12603031 (-)
G140883 NA non-coding downstream 366034 12357446 ~ 12362204 (-)
G140763 LOC106513751,LOC103376442,LOC107375490 non-coding downstream 931224 11795976 ~ 11797014 (-)
G140764 NA non-coding downstream 938312 11786414 ~ 11789926 (-)
G140971 NA non-coding upstream 82095 12821902 ~ 12830926 (-)
G141175 NA non-coding upstream 820712 13560519 ~ 13560839 (-)
G141201 NA non-coding upstream 1026149 13765956 ~ 13836294 (-)
G141219 LOC108273954,LOC108438198,LOC107550059,LOC107601819,LOC106904390 non-coding upstream 1083607 13823414 ~ 13834549 (-)
G141221 NA non-coding upstream 1103372 13843179 ~ 13843471 (-)
G140757 NA other downstream 994476 11694006 ~ 11733762 (-)
G140758 NA other downstream 1080619 11640816 ~ 11647619 (-)
AMCG00003110 LOC107699307,LOC108442385,LOC108263686,LOC107727357,LOC105890865,LOC104955882 other downstream 1105589 11608463 ~ 11622649 (-)
AMCG00003049 NA other downstream 2396866 10301800 ~ 10331372 (-)
AMCG00003017 NA other downstream 3120922 9596943 ~ 9607316 (-)
AMCG00003144 NA other upstream 111214 12851021 ~ 12855341 (-)
G141004 NA other upstream 121619 12861426 ~ 12879421 (-)
AMCG00003164 sec24c other upstream 667465 13407272 ~ 13430324 (-)
AMCG00003214 phs,pcbd1,LOC107743500,LOC107601888 other upstream 1929608 14669415 ~ 14674420 (-)
AMCG00003231 NA other upstream 2316836 15056643 ~ 15140819 (-)

Expression


Co-expression Network