AMCG00003141 (LOC105923605)


Basic Information

Item Value
gene id AMCG00003141
gene name LOC105923605
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030139.1
NCBI id CM030139.1
chromosome length 23121578
location 12878685 ~ 12882998 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00003141
CATCATGTTAGTTTCAGATGAAGTTTTAGCAGCCGAGGCAGGCAGCGCACCCACTTTGCTCCAGGGAGGACAGACAGTGAAAGTGCGGCAGAAATGGCAGCTCGTCTTTTCCTCCGGGCTTCGTGCAATGCGGTTCGTTTGGCCAGCGCAAATGCAGCCCCCAGAGCTTCCCTGCGGGCCATAGCCACGGAGAAGGGAATCCCAACTGATGATGAGCAAGCCACAGGACTGGAGCGTCGCTCCTTACAGGCTTTGAAGAAAGGACAGGACCCTTTCAGCATTTTCAGGCCCAAGACATATACAGGAACCAAGGAGGACCCGCATATAGTTCCCTGCATTGGCAACAAGAGACTGGTTGGCTGCCTGTGTGAGGAGGACAACACGGCCATCGTGTGGTTCTGGCTCCATGAGGGAAATGCCCAGCGCTGCCCCTCCTGCGGCTCTCATTACAAACTGATCCACCACGATCTCCCGCATTAAAACGCAAGGCAGAGATATTGCTCCGCTCatgaacagatttattttttcaccaacACAAAGGGAAGTTGGTCTCACTTGCAAAAGAATGTgtgcactttaaataaaactaaaccaaGAAACGATTGTCAGacatcattttttccccccgaCGAGCTGAGGGGATCGCACTTGACACAATTATACATTCAGATTCTCTTCAGCCTTCTGTGGGGGTTTGTTGAAGCGAGACGACACACAGAAAAGGATTTGCACTTGCCCCTATCTTAAgagaacaaaatgatgtaaTTTGTGTGGTGCCACTAGAAGGTAGGAAACACACCTGAAATGAGCATTATTATGCTAATAAAACGTGTATTTGCACTAACACATCGATAACATAAACCATCCCACCTTGCCGTTTTAAATGTAGCTGCTAATTTTATACAGAGTATCTTATCAGTAATACAGAAACTcagattttataaaaacaaatgctgatgGCACAGAAACTAACATAAATCAATTTGTTCAAGTATTTGATTAATTCTACATAGGCTACTGCATGCCCCCAAGATTGTGAACGCCTGGAAAGTTACCCATACAAtctaatattttaagaaatgatCCACAAGAGGAAACGTTCGCTTTAATTGTACACAACTCCAGCTCCGAGTTTAGCACCCCCCCTGCCCCGACCCCGAACAGTGCACATGGTCCTGAACAAGTCTGTTAAAAAAAGACCACACTTTACACGCAACAGTAAGCGATTACATTCAAAAtagtgatcagtgccaaaatgtACTGATGCATCACTTAGATAAGATAAGTAACTGCTAatgttaaatgcatattttaatgcagctagaaaacaatgaaaaaaaactaaaatgaagaaacaaataagCATTGACTAAAATCAGAAAGCAGTTTGTCTTCCAGATAGAAACCAAATTTTCCCTGTTTAGTCCTTCAGGGGGCAAATccacaaataaatgaaggaaCAGTTTGAGAATGGGGTCCGGCAGATGCATTCGGACACAAAGCCTCTCATGACCCAGGTTTCAGGTCGCCCTCTTGACTGTTCctaatttgtatttctcctCTCGTCTTGAAACAATTGTGGCTAATGGATTTCTTAAAGTGCCTTTTTACACATTCTTCAGATTCCATCCAagtcagtcaattaaaaaaaaaaaaaaaaaa
>TU177338
TGTCCATCATGTTAGTTTCAGATGAAGTTTTAGCAGCCGAGGCAGGCAGCGCACCCACTTTGCTCCAGGGAGGACAGACAGTGAAAGTGCGGCAGAAATGGCAGCTCGTCTTTTCCTCCGGGCTTCGTGCAATGCGGTTCGTTTGGCCAGCGCAAATGCAGCCCCCAGAGCTTCCCTGCGGGCCATAGCCACGGAGAAGGGAATCCCAACTGATGATGAGCAAGCCACAGGACTGGAGCGTCGCTCCTTACAGGCTTTGAAGAAAGGACAGGACCCTTTCAGCATTTTCAGGCCCAAGACATATACAGGAACCAAGGAGGACCCGCATATAGTTCCCTGCATTGGCAACAAGAGACTGGTTGGCTGCCTGTGTGAGGAGGACAACACGGCCATCGTGTGGTTCTGGCTCCATGAGGGAAATGCCCAGCGCTGCCCCTCCTGCGGCTCTCATTACAAACTGATCCACCACGATCTCCCGCATTAAAACGCAAGGCAGAGATATTGCTCCGCTCatgaacagatttattttttcaccaacACAAAGGGAAGTTGGTCTCACTTGCAAAAGAATGTgtgcactttaaataaaactaaaccaaGAAACGATTGTCAGacatcattttttccccccgaCGAGCTGAGGGGATCGCACTTGACACAATTATACATTCAGATTCTCTTCAGCCTTCTGTGGGGGTTTGTTGAAGCGAGACGACACACAGAAAAGGATTTGCACTTGCCCCTATCTTAAgagaacaaaatgatgtaaTTTGTGTGGTGCCACTAGAAGGTAGGAAACACACCTGAAATGAGCATTATTATGCTAATAAAACGTGTATTTGCACTAACACATCGATAACATAAACCATCCCACCTTGCCGTTTTAAATGTAGCTGCTAATTTTATACAGAGTATCTTATCAGTAATACAGAAACTcagattttataaaaacaaatgctgatgGCACAGAAACTAACATAAATCAATTTGTTCAAGTATTTGATTAATTCTACATAGGCTACTGCATGCCCCCAAGATTGTGAACGCCTGGAAAGTTACCCATACAAtctaatattttaagaaatgatCCACAAGAGGAAACGTTCGCTTTAATTGTACACAACTCCAGCTCCGAGTTTAGCACCCCCCCTGCCCCGACCCCGAACAGTGCACATGGTCCTGAACAAGTCTGTTAAAAAAAGACCACACTTTACACGCAACAGTAAGCGATTACATTCAAAAtagtgatcagtgccaaaatgtACTGATGCATCACTTAGATAAGATAAGTAACTGCTAatgttaaatgcatattttaatgcagctagaaaacaatgaaaaaaaactaaaatgaagaaacaaataagCATTGACTAAAATCAGAAAGCAGTTTGTCTTCCAGATAGAAACCAAATTTTCCCTGTTTAGTCCTTCAGGGGGCAAATccacaaataaatgaaggaaCAGTTTGAGAATGGGGTCCGGCAGATGCATTCGGACACAAAGCCTCTCATGACCCAGGTTTCAGGTCGCCCTCTTGACTGTTCctaatttgtatttctcctCTCGTCTTGAAACAATTGTGGCTAATGGATTTCTTAAAGTGCCTTTTTACACATTCTTCAGATTCCATCCAagtcagtcaattaaaaaaaaaaaaaaaaaacatacaacctGTCTGTGAAGTCTAATGACGCACTACTCTTTTTAGTATTGTGTTTAAGCAACATTACACTAAGTTGAAGCCTTCGTAGTGGTCGATGGCCTGAATGAGTTTGGCATGTAGTGTCTCTCGGTCCGTGTATTTGGGCAGATCCAACAGGTTGAAGCAGGTGTGGGCCACGGGCAGGTACTGGTCTCCTCCTCCTGTGGGCTGGATCACCAGTTTAAGGCTTTTCATGCCCATTATGGGAATTCGGTCAC

Function

NR:

description
cytochrome c oxidase subunit 5B, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00003141 False 1662 mRNA 0.43 4 12878689 12882741
TU177338 True 1923 TUCP 0.44 4 12878685 12882998

Neighbor

gene id symbol gene type direction distance location
AMCG00003140 sirt1 coding upstream 3651 12870027 ~ 12875034 (+)
AMCG00003130 NA coding upstream 130849 12743746 ~ 12747836 (+)
AMCG00003139 NA coding upstream 155135 12723326 ~ 12723550 (+)
AMCG00003131 LOC107682932 coding upstream 170453 12701128 ~ 12708232 (+)
AMCG00003128 NA coding upstream 196263 12681742 ~ 12682422 (+)
AMCG00003150 NA coding downstream 62806 12945804 ~ 12948577 (+)
AMCG00003149 NA coding downstream 87707 12970705 ~ 12982068 (+)
AMCG00003151 NA coding downstream 117167 13000165 ~ 13000605 (+)
AMCG00003156 pkd2l1 coding downstream 123814 13006812 ~ 13019477 (+)
AMCG00003157 NA coding downstream 146088 13029086 ~ 13056989 (+)
G140961 NA non-coding upstream 47579 12821875 ~ 12831106 (+)
G140872 NA non-coding upstream 592409 12286047 ~ 12286276 (+)
G140857 NA non-coding upstream 719934 12154813 ~ 12158751 (+)
G140738 NA non-coding upstream 1245160 11631963 ~ 11633525 (+)
G140723 NA non-coding upstream 1340731 11537647 ~ 11537954 (+)
G141066 NA non-coding downstream 228739 13111737 ~ 13111936 (+)
G141156 NA non-coding downstream 677600 13560598 ~ 13560839 (+)
G141220 NA non-coding downstream 960181 13843179 ~ 13843515 (+)
G141222 NA non-coding downstream 961748 13844746 ~ 13844952 (+)
G141224 NA non-coding downstream 962952 13845950 ~ 13846154 (+)
G140939 NA other upstream 138918 12730731 ~ 12739767 (+)
AMCG00003129 rab11fip2,LOC107585298,LOC107733785 other upstream 200526 12371999 ~ 12678159 (+)
G140693 NA other upstream 1390801 11486191 ~ 11487884 (+)
G140613 NA other upstream 1666574 11209573 ~ 11212111 (+)
G140478 nkx23,LOC106591187,LOC101065636,LOC101073339,LOC101063040,LOC104962797 other upstream 2121845 10754901 ~ 10756840 (+)
AMCG00003158 NA other downstream 223458 13106456 ~ 13110634 (+)
AMCG00003168 LOC107706030,LOC107743565,LOC107666486 other downstream 841912 13724910 ~ 13743543 (+)
AMCG00003182 NA other downstream 1239785 14122783 ~ 14131275 (+)
G141331 NA other downstream 1297782 14180780 ~ 14184643 (+)
AMCG00003195 NA other downstream 1400852 14283850 ~ 14299993 (+)

Expression


Co-expression Network